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Journal Abstract Search

258 related items for PubMed ID: 17785534

  • 1. Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.
    He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R.
    Genome Res; 2007 Oct; 17(10):1471-7. PubMed ID: 17785534
    [Abstract] [Full Text] [Related]

  • 2. The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.
    Wang Y, Chen J, Wei G, He H, Zhu X, Xiao T, Yuan J, Dong B, He S, Skogerbø G, Chen R.
    Nucleic Acids Res; 2011 Jul; 39(12):5203-14. PubMed ID: 21378118
    [Abstract] [Full Text] [Related]

  • 3. Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins.
    Aftab MN, He H, Skogerbø G, Chen R.
    BMC Genomics; 2008 Jun 11; 9():278. PubMed ID: 18547420
    [Abstract] [Full Text] [Related]

  • 4. Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.
    He H, Cai L, Skogerbø G, Deng W, Liu T, Zhu X, Wang Y, Jia D, Zhang Z, Tao Y, Zeng H, Aftab MN, Cui Y, Liu G, Chen R.
    Nucleic Acids Res; 2006 Jun 11; 34(10):2976-83. PubMed ID: 16738136
    [Abstract] [Full Text] [Related]

  • 5. Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.
    Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.
    BMC Genomics; 2009 Feb 25; 10():92. PubMed ID: 19243610
    [Abstract] [Full Text] [Related]

  • 6. Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.
    Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.
    BMC Biol; 2008 Jul 08; 6():30. PubMed ID: 18611272
    [Abstract] [Full Text] [Related]

  • 7. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
    Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.
    Genome Res; 2006 Jan 08; 16(1):20-9. PubMed ID: 16344563
    [Abstract] [Full Text] [Related]

  • 8. Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.
    Missal K, Zhu X, Rose D, Deng W, Skogerbø G, Chen R, Stadler PF.
    J Exp Zool B Mol Dev Evol; 2006 Jul 15; 306(4):379-92. PubMed ID: 16425273
    [Abstract] [Full Text] [Related]

  • 9. Identification of intermediate-size non-coding RNAs involved in the UV-induced DNA damage response in C. elegans.
    Li A, Wei G, Wang Y, Zhou Y, Zhang XE, Bi L, Chen R.
    PLoS One; 2012 Jul 15; 7(11):e48066. PubMed ID: 23144846
    [Abstract] [Full Text] [Related]

  • 10. High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans.
    Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG.
    Genome Biol; 2009 Jul 15; 10(9):R101. PubMed ID: 19778439
    [Abstract] [Full Text] [Related]

  • 11. Functional exploration of the C. elegans genome using DNA microarrays.
    Reinke V.
    Nat Genet; 2002 Dec 15; 32 Suppl():541-6. PubMed ID: 12454651
    [Abstract] [Full Text] [Related]

  • 12. Genome-wide profiling of the C. elegans dsRNAome.
    Whipple JM, Youssef OA, Aruscavage PJ, Nix DA, Hong C, Johnson WE, Bass BL.
    RNA; 2015 May 15; 21(5):786-800. PubMed ID: 25805852
    [Abstract] [Full Text] [Related]

  • 13. Genetics. Revealing the dark matter of the genome.
    Blaxter M.
    Science; 2010 Dec 24; 330(6012):1758-9. PubMed ID: 21177977
    [No Abstract] [Full Text] [Related]

  • 14. C. elegans noncoding RNA genes.
    Stricklin SL, Griffiths-Jones S, Eddy SR.
    WormBook; 2005 Jun 25; ():1-7. PubMed ID: 18023116
    [Abstract] [Full Text] [Related]

  • 15. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
    Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X, modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.
    Science; 2010 Dec 24; 330(6012):1775-87. PubMed ID: 21177976
    [Abstract] [Full Text] [Related]

  • 16. Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans.
    Laing R, Hunt M, Protasio AV, Saunders G, Mungall K, Laing S, Jackson F, Quail M, Beech R, Berriman M, Gilleard JS.
    PLoS One; 2011 Dec 24; 6(8):e23216. PubMed ID: 21858033
    [Abstract] [Full Text] [Related]

  • 17. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans.
    Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH.
    Genome Res; 2009 Apr 24; 19(4):657-66. PubMed ID: 19181841
    [Abstract] [Full Text] [Related]

  • 18. Overlapping cell population expression profiling and regulatory inference in C. elegans.
    Burdick J, Walton T, Preston E, Zacharias A, Raj A, Murray JI.
    BMC Genomics; 2016 Feb 29; 17():159. PubMed ID: 26926147
    [Abstract] [Full Text] [Related]

  • 19. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
    Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.
    BMC Bioinformatics; 2010 Apr 29; 11():221. PubMed ID: 20429936
    [Abstract] [Full Text] [Related]

  • 20. Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants.
    Asikainen S, Storvik M, Lakso M, Wong G.
    FEBS Lett; 2007 Oct 30; 581(26):5050-4. PubMed ID: 17919598
    [Abstract] [Full Text] [Related]

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