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Journal Abstract Search

713 related items for PubMed ID: 17877396

  • 21. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.
    Mackerell AD, Feig M, Brooks CL.
    J Comput Chem; 2004 Aug; 25(11):1400-15. PubMed ID: 15185334
    [Abstract] [Full Text] [Related]

  • 22. Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution.
    Hu H, Elstner M, Hermans J.
    Proteins; 2003 Feb 15; 50(3):451-63. PubMed ID: 12557187
    [Abstract] [Full Text] [Related]

  • 23. Peptide models XLV: conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins.
    Láng A, Csizmadia IG, Perczel A.
    Proteins; 2005 Feb 15; 58(3):571-88. PubMed ID: 15616985
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  • 24. Classical and quantum mechanical/molecular mechanical molecular dynamics simulations of alanine dipeptide in water: comparisons with IR and vibrational circular dichroism spectra.
    Kwac K, Lee KK, Han JB, Oh KI, Cho M.
    J Chem Phys; 2008 Mar 14; 128(10):105106. PubMed ID: 18345930
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  • 25. Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study.
    Graf J, Nguyen PH, Stock G, Schwalbe H.
    J Am Chem Soc; 2007 Feb 07; 129(5):1179-89. PubMed ID: 17263399
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  • 26. Conformational preferences of proline oligopeptides.
    Kang YK, Jhon JS, Park HS.
    J Phys Chem B; 2006 Sep 07; 110(35):17645-55. PubMed ID: 16942110
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  • 27. A survey of left-handed polyproline II helices.
    Stapley BJ, Creamer TP.
    Protein Sci; 1999 Mar 07; 8(3):587-95. PubMed ID: 10091661
    [Abstract] [Full Text] [Related]

  • 28. Conformational studies on model peptides with 1-aminocyclopropane 1-carboxylic acid residues.
    Balaji VN, Ramnarayan K, Chan MF, Rao SN.
    Pept Res; 1994 Mar 07; 7(2):60-71. PubMed ID: 8012122
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  • 29. Host-guest scale of left-handed polyproline II helix formation.
    Rucker AL, Pager CT, Campbell MN, Qualls JE, Creamer TP.
    Proteins; 2003 Oct 01; 53(1):68-75. PubMed ID: 12945050
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  • 30. On the helix-coil transition in alanine based polypeptides in gas phase.
    Wei Y, Nadler W, Hansmann UH.
    J Chem Phys; 2007 May 28; 126(20):204307. PubMed ID: 17552762
    [Abstract] [Full Text] [Related]

  • 31. Conformational and sequence signatures in beta helix proteins.
    Iengar P, Joshi NV, Balaram P.
    Structure; 2006 Mar 28; 14(3):529-42. PubMed ID: 16531237
    [Abstract] [Full Text] [Related]

  • 32. Polyproline II helical structure in protein unfolded states: lysine peptides revisited.
    Rucker AL, Creamer TP.
    Protein Sci; 2002 Apr 28; 11(4):980-5. PubMed ID: 11910041
    [Abstract] [Full Text] [Related]

  • 33. Left-handed polyproline II helix formation is (very) locally driven.
    Creamer TP.
    Proteins; 1998 Nov 01; 33(2):218-26. PubMed ID: 9779789
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  • 34. Conformational study of peptides containing dehydrophenylalanine: helical structures without hydrogen bond.
    Nandel FS, Kaur H, Malik N, Shankar N, Jain DV.
    Indian J Biochem Biophys; 2001 Dec 01; 38(6):417-25. PubMed ID: 11989673
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  • 35. A classical molecular dynamics investigation of the free energy and structure of short polyproline conformers.
    Moradi M, Babin V, Roland C, Sagui C.
    J Chem Phys; 2010 Sep 28; 133(12):125104. PubMed ID: 20886968
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  • 36. Impact of cis-proline analogs on peptide conformation.
    Che Y, Marshall GR.
    Biopolymers; 2006 Apr 05; 81(5):392-406. PubMed ID: 16358327
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  • 37. Non-arrhenius behavior in the unfolding of a short, hydrophobic alpha-helix. Complementarity of molecular dynamics and lattice model simulations.
    Collet O, Chipot C.
    J Am Chem Soc; 2003 May 28; 125(21):6573-80. PubMed ID: 12785798
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  • 38. Formation of left-handed helices in hybrid peptide oligomers with cis beta-sugar amino acid and L-Ala as building blocks.
    Jagadeesh B, Prabhakar A, Sarma GD, Chandrasekhar S, Chandrashekar G, Reddy MS, Jagannadh B.
    Chem Commun (Camb); 2007 Jan 28; (4):371-3. PubMed ID: 17220974
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  • 39. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S, Sasidhar YU.
    J Pept Sci; 2007 Oct 28; 13(10):679-92. PubMed ID: 17787022
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  • 40. Gas-phase models of gamma turns: effect of side-chain/backbone interactions investigated by IR/UV spectroscopy and quantum chemistry.
    Chin W, Piuzzi F, Dognon JP, Dimicoli I, Mons M.
    J Chem Phys; 2005 Aug 22; 123(8):084301. PubMed ID: 16164285
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