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230 related items for PubMed ID: 17889993

  • 1.
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  • 3. Stochastic search strategy for estimation of maximum likelihood phylogenetic trees.
    Salter LA, Pearl DK.
    Syst Biol; 2001 Feb; 50(1):7-17. PubMed ID: 12116596
    [Abstract] [Full Text] [Related]

  • 4. Towards building the tree of life: a simulation study for all angiosperm genera.
    Salamin N, Hodkinson TR, Savolainen Coates V.
    Syst Biol; 2005 Apr; 54(2):183-96. PubMed ID: 16012091
    [Abstract] [Full Text] [Related]

  • 5. Phylogenetic MCMC algorithms are misleading on mixtures of trees.
    Mossel E, Vigoda E.
    Science; 2005 Sep 30; 309(5744):2207-9. PubMed ID: 16195459
    [Abstract] [Full Text] [Related]

  • 6. Folding small proteins via annealing stochastic approximation Monte Carlo.
    Cheon S, Liang F.
    Biosystems; 2011 Sep 30; 105(3):243-9. PubMed ID: 21679746
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  • 7. A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution.
    Blanquart S, Lartillot N.
    Mol Biol Evol; 2006 Nov 30; 23(11):2058-71. PubMed ID: 16931538
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  • 8. Estimating species trees using multiple-allele DNA sequence data.
    Liu L, Pearl DK, Brumfield RT, Edwards SV.
    Evolution; 2008 Aug 30; 62(8):2080-91. PubMed ID: 18462214
    [Abstract] [Full Text] [Related]

  • 9. Sampling phylogenetic tree space with the generalized Gibbs sampler.
    Keith JM, Adams P, Ragan MA, Bryant D.
    Mol Phylogenet Evol; 2005 Mar 30; 34(3):459-68. PubMed ID: 15683921
    [Abstract] [Full Text] [Related]

  • 10. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty.
    Parker J, Rambaut A, Pybus OG.
    Infect Genet Evol; 2008 May 30; 8(3):239-46. PubMed ID: 17921073
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  • 12. Multiscale spatial Monte Carlo simulations: multigriding, computational singular perturbation, and hierarchical stochastic closures.
    Chatterjee A, Vlachos DG.
    J Chem Phys; 2006 Feb 14; 124(6):64110. PubMed ID: 16483199
    [Abstract] [Full Text] [Related]

  • 13. Adaptive aggregation method for the Chemical Master Equation.
    Zhang J, Watson LT, Cao Y.
    Int J Comput Biol Drug Des; 2009 Feb 14; 2(2):134-48. PubMed ID: 20090167
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  • 14. Monte Carlo method for computing density of states and quench probability of potential energy and enthalpy landscapes.
    Mauro JC, Loucks RJ, Balakrishnan J, Raghavan S.
    J Chem Phys; 2007 May 21; 126(19):194103. PubMed ID: 17523794
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  • 15. Estimation of evolutionary parameters with phylogenetic trees.
    Wang Q, Salter LA, Pearl DK.
    J Mol Evol; 2002 Dec 21; 55(6):684-95. PubMed ID: 12486527
    [Abstract] [Full Text] [Related]

  • 16. [Tree reconciliation: reconstruction of species evolution by phylogenetic gene trees].
    V'iugin VV, Gel'fand MS, Liubetskiĭ VA.
    Mol Biol (Mosk); 2002 Dec 21; 36(5):807-16. PubMed ID: 12391844
    [Abstract] [Full Text] [Related]

  • 17. Sequential Monte Carlo point-process estimation of kinematics from neural spiking activity for brain-machine interfaces.
    Wang Y, Paiva AR, Príncipe JC, Sanchez JC.
    Neural Comput; 2009 Oct 21; 21(10):2894-930. PubMed ID: 19548797
    [Abstract] [Full Text] [Related]

  • 18. Summarizing a posterior distribution of trees using agreement subtrees.
    Cranston KA, Rannala B.
    Syst Biol; 2007 Aug 21; 56(4):578-90. PubMed ID: 17654363
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  • 19. Path ensembles and path sampling in nonequilibrium stochastic systems.
    Harland B, Sun SX.
    J Chem Phys; 2007 Sep 14; 127(10):104103. PubMed ID: 17867733
    [Abstract] [Full Text] [Related]

  • 20. An algorithm for constructing local regions in a phylogenetic network.
    Huber KT, Watson EE, Hendy MD.
    Mol Phylogenet Evol; 2001 Apr 14; 19(1):1-8. PubMed ID: 11286486
    [Abstract] [Full Text] [Related]

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