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Journal Abstract Search

288 related items for PubMed ID: 17907576

  • 1. CpG PatternFinder: a Windows-based utility program for easy and rapid identification of the CpG methylation status of DNA.
    Xu YH, Manoharan HT, Pitot HC.
    Biotechniques; 2007 Sep; 43(3):334, 336-40, 342. PubMed ID: 17907576
    [Abstract] [Full Text] [Related]

  • 2. Microsoft Word macro for analysis of cytosine methylation by the bisulfite deamination reaction.
    Singal R, Grimes SR.
    Biotechniques; 2001 Jan; 30(1):116-20. PubMed ID: 11196301
    [Abstract] [Full Text] [Related]

  • 3. Spreadsheet-based program for the analysis of DNA methylation.
    Anbazhagan R, Herman JG, Enika K, Gabrielson E.
    Biotechniques; 2001 Jan; 30(1):110-4. PubMed ID: 11196300
    [Abstract] [Full Text] [Related]

  • 4. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X, Han Y, Zhou L, Chen E, Lu B, Liu Y, Pan X, Cowley AW, Liang M, Wu Q, Lu Y, Liu P.
    Bioinformatics; 2018 Aug 15; 34(16):2715-2723. PubMed ID: 29579198
    [Abstract] [Full Text] [Related]

  • 5. MethPrimer: designing primers for methylation PCRs.
    Li LC, Dahiya R.
    Bioinformatics; 2002 Nov 15; 18(11):1427-31. PubMed ID: 12424112
    [Abstract] [Full Text] [Related]

  • 6. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.
    Srivastava GP, Guo J, Shi H, Xu D.
    Bioinformatics; 2008 Sep 01; 24(17):1837-42. PubMed ID: 18579568
    [Abstract] [Full Text] [Related]

  • 7. Predicting methylation status of CpG islands in the human brain.
    Fang F, Fan S, Zhang X, Zhang MQ.
    Bioinformatics; 2006 Sep 15; 22(18):2204-9. PubMed ID: 16837523
    [Abstract] [Full Text] [Related]

  • 8. ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons.
    Scala G, Affinito O, Palumbo D, Florio E, Monticelli A, Miele G, Chiariotti L, Cocozza S.
    BMC Bioinformatics; 2016 Nov 25; 17(1):484. PubMed ID: 27884103
    [Abstract] [Full Text] [Related]

  • 9. Methodological aspects of whole-genome bisulfite sequencing analysis.
    Adusumalli S, Mohd Omar MF, Soong R, Benoukraf T.
    Brief Bioinform; 2015 May 25; 16(3):369-79. PubMed ID: 24867940
    [Abstract] [Full Text] [Related]

  • 10. methGraph: a genome visualization tool for PCR-based methylation assays.
    Lefever S, Hoebeeck J, Pattyn F, Tusnády G, De Paepe A, Speleman F, Arányi T, Vandesompele J.
    Epigenetics; 2010 Feb 16; 5(2):159-63. PubMed ID: 20160504
    [Abstract] [Full Text] [Related]

  • 11. Locus-Specific DNA Methylation Analysis by Targeted Deep Bisulfite Sequencing.
    Leitão E, Beygo J, Zeschnigk M, Klein-Hitpass L, Bargull M, Rahmann S, Horsthemke B.
    Methods Mol Biol; 2018 Feb 16; 1767():351-366. PubMed ID: 29524145
    [Abstract] [Full Text] [Related]

  • 12. Sequence analysis and editing for bisulphite genomic sequencing projects.
    Carr IM, Valleley EM, Cordery SF, Markham AF, Bonthron DT.
    Nucleic Acids Res; 2007 Feb 16; 35(10):e79. PubMed ID: 17517768
    [Abstract] [Full Text] [Related]

  • 13. Fluorescence polarization-based method with bisulfite conversion-specific one-label extension for quantification of single CpG dinucleotide methylation.
    Li S, Wang Z, Zhou L, Luo F, Zhao C.
    Genome; 2015 Jul 16; 58(7):357-63. PubMed ID: 26334496
    [Abstract] [Full Text] [Related]

  • 14. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
    Bock C, Reither S, Mikeska T, Paulsen M, Walter J, Lengauer T.
    Bioinformatics; 2005 Nov 01; 21(21):4067-8. PubMed ID: 16141249
    [Abstract] [Full Text] [Related]

  • 15. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K, Ting AH, Li J.
    BMC Bioinformatics; 2015 Jul 11; 16():220. PubMed ID: 26163275
    [Abstract] [Full Text] [Related]

  • 16. CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data.
    Su J, Yan H, Wei Y, Liu H, Liu H, Wang F, Lv J, Wu Q, Zhang Y.
    Nucleic Acids Res; 2013 Jan 07; 41(1):e4. PubMed ID: 22941633
    [Abstract] [Full Text] [Related]

  • 17. DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.
    Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A.
    Methods Mol Biol; 2009 Jan 07; 507():177-87. PubMed ID: 18987815
    [Abstract] [Full Text] [Related]

  • 18. Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing.
    Komori HK, LaMere SA, Hart T, Head SR, Torkamani A, Salomon DR.
    Methods Mol Biol; 2018 Jan 07; 1708():333-348. PubMed ID: 29224152
    [Abstract] [Full Text] [Related]

  • 19. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data.
    Gaspar JM, Hart RP.
    BMC Bioinformatics; 2017 Nov 29; 18(1):528. PubMed ID: 29187143
    [Abstract] [Full Text] [Related]

  • 20. AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
    Chen J, Lutsik P, Akulenko R, Walter J, Helms V.
    J Bioinform Comput Biol; 2014 Dec 29; 12(6):1442005. PubMed ID: 25553811
    [Abstract] [Full Text] [Related]

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