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Journal Abstract Search

343 related items for PubMed ID: 17957770

  • 1. Flexible protein-flexible ligand docking with disrupted velocity simulated annealing.
    Huang Z, Wong CF, Wheeler RA.
    Proteins; 2008 Apr; 71(1):440-54. PubMed ID: 17957770
    [Abstract] [Full Text] [Related]

  • 2. Conformational selection of protein kinase A revealed by flexible-ligand flexible-protein docking.
    Huang Z, Wong CF.
    J Comput Chem; 2009 Mar; 30(4):631-44. PubMed ID: 18711718
    [Abstract] [Full Text] [Related]

  • 3. Molecular docking of balanol to dynamics snapshots of protein kinase A.
    Wong CF, Kua J, Zhang Y, Straatsma TP, McCammon JA.
    Proteins; 2005 Dec 01; 61(4):850-8. PubMed ID: 16245317
    [Abstract] [Full Text] [Related]

  • 4. Protein flexibility in ligand docking and virtual screening to protein kinases.
    Cavasotto CN, Abagyan RA.
    J Mol Biol; 2004 Mar 12; 337(1):209-25. PubMed ID: 15001363
    [Abstract] [Full Text] [Related]

  • 5. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD, Jewsbury PJ, Essex JW.
    J Comput Chem; 2003 Oct 12; 24(13):1637-56. PubMed ID: 12926007
    [Abstract] [Full Text] [Related]

  • 6. Flexible ligand docking: a multistep strategy approach.
    Wang J, Kollman PA, Kuntz ID.
    Proteins; 1999 Jul 01; 36(1):1-19. PubMed ID: 10373002
    [Abstract] [Full Text] [Related]

  • 7. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H, Buning C, Rarey M, Lengauer T.
    J Mol Biol; 2001 Apr 27; 308(2):377-95. PubMed ID: 11327774
    [Abstract] [Full Text] [Related]

  • 8. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J, Wang Q, Liu Z, Li Q, Yang K, Lai L.
    Proteins; 2006 Mar 01; 62(4):934-46. PubMed ID: 16395666
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  • 10. FLIPDock: docking flexible ligands into flexible receptors.
    Zhao Y, Sanner MF.
    Proteins; 2007 Aug 15; 68(3):726-37. PubMed ID: 17523154
    [Abstract] [Full Text] [Related]

  • 11. Lessons in molecular recognition: the effects of ligand and protein flexibility on molecular docking accuracy.
    Erickson JA, Jalaie M, Robertson DH, Lewis RA, Vieth M.
    J Med Chem; 2004 Jan 01; 47(1):45-55. PubMed ID: 14695819
    [Abstract] [Full Text] [Related]

  • 12. DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.
    Antes I.
    Proteins; 2010 Apr 01; 78(5):1084-104. PubMed ID: 20017216
    [Abstract] [Full Text] [Related]

  • 13. Accounting for loop flexibility during protein-protein docking.
    Bastard K, Prévost C, Zacharias M.
    Proteins; 2006 Mar 01; 62(4):956-69. PubMed ID: 16372349
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  • 18. Novel procedure for modeling ligand/receptor induced fit effects.
    Sherman W, Day T, Jacobson MP, Friesner RA, Farid R.
    J Med Chem; 2006 Jan 26; 49(2):534-53. PubMed ID: 16420040
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  • 19. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
    Liu Z, Dominy BN, Shakhnovich EI.
    J Am Chem Soc; 2004 Jul 14; 126(27):8515-28. PubMed ID: 15238009
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