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169 related items for PubMed ID: 17975834

  • 1. Characterization of local geometry of protein surfaces with the visibility criterion.
    Li B, Turuvekere S, Agrawal M, La D, Ramani K, Kihara D.
    Proteins; 2008 May 01; 71(2):670-83. PubMed ID: 17975834
    [Abstract] [Full Text] [Related]

  • 2. Form follows function: shape analysis of protein cavities for receptor-based drug design.
    Weisel M, Proschak E, Kriegl JM, Schneider G.
    Proteomics; 2009 Jan 01; 9(2):451-9. PubMed ID: 19142949
    [Abstract] [Full Text] [Related]

  • 3. Comprehensive identification of "druggable" protein ligand binding sites.
    An J, Totrov M, Abagyan R.
    Genome Inform; 2004 Jan 01; 15(2):31-41. PubMed ID: 15706489
    [Abstract] [Full Text] [Related]

  • 4. Molecular docking for substrate identification: the short-chain dehydrogenases/reductases.
    Favia AD, Nobeli I, Glaser F, Thornton JM.
    J Mol Biol; 2008 Jan 18; 375(3):855-74. PubMed ID: 18036612
    [Abstract] [Full Text] [Related]

  • 5. EADock: docking of small molecules into protein active sites with a multiobjective evolutionary optimization.
    Grosdidier A, Zoete V, Michielin O.
    Proteins; 2007 Jun 01; 67(4):1010-25. PubMed ID: 17380512
    [Abstract] [Full Text] [Related]

  • 6. The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
    Peters KP, Fauck J, Frömmel C.
    J Mol Biol; 1996 Feb 16; 256(1):201-13. PubMed ID: 8609611
    [Abstract] [Full Text] [Related]

  • 7. Identification of protein functional surfaces by the concept of a split pocket.
    Tseng YY, Li WH.
    Proteins; 2009 Sep 16; 76(4):959-76. PubMed ID: 19326458
    [Abstract] [Full Text] [Related]

  • 8. Architectural repertoire of ligand-binding pockets on protein surfaces.
    Weisel M, Kriegl JM, Schneider G.
    Chembiochem; 2010 Mar 01; 11(4):556-63. PubMed ID: 20069621
    [Abstract] [Full Text] [Related]

  • 9. Self-organizing fuzzy graphs for structure-based comparison of protein pockets.
    Reisen F, Weisel M, Kriegl JM, Schneider G.
    J Proteome Res; 2010 Dec 03; 9(12):6498-510. PubMed ID: 20883038
    [Abstract] [Full Text] [Related]

  • 10. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R, Kurbatova N, Thornton J.
    Bioinformatics; 2008 Aug 15; 24(16):i105-11. PubMed ID: 18689810
    [Abstract] [Full Text] [Related]

  • 11. Fast protein tertiary structure retrieval based on global surface shape similarity.
    Sael L, Li B, La D, Fang Y, Ramani K, Rustamov R, Kihara D.
    Proteins; 2008 Sep 15; 72(4):1259-73. PubMed ID: 18361455
    [Abstract] [Full Text] [Related]

  • 12. A method for localizing ligand binding pockets in protein structures.
    Glaser F, Morris RJ, Najmanovich RJ, Laskowski RA, Thornton JM.
    Proteins; 2006 Feb 01; 62(2):479-88. PubMed ID: 16304646
    [Abstract] [Full Text] [Related]

  • 13. The association between a negatively charged ligand and the electronegative binding pocket of its receptor.
    Huang HC, Briggs JM.
    Biopolymers; 2002 Apr 05; 63(4):247-60. PubMed ID: 11807752
    [Abstract] [Full Text] [Related]

  • 14. Detection of multiscale pockets on protein surfaces using mathematical morphology.
    Kawabata T.
    Proteins; 2010 Apr 05; 78(5):1195-211. PubMed ID: 19938154
    [Abstract] [Full Text] [Related]

  • 15. Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites.
    Kawabata T, Go N.
    Proteins; 2007 Aug 01; 68(2):516-29. PubMed ID: 17444522
    [Abstract] [Full Text] [Related]

  • 16. Automatic identification and representation of protein binding sites for molecular docking.
    Ruppert J, Welch W, Jain AN.
    Protein Sci; 1997 Mar 01; 6(3):524-33. PubMed ID: 9070435
    [Abstract] [Full Text] [Related]

  • 17. Computational approaches to identifying and characterizing protein binding sites for ligand design.
    Henrich S, Salo-Ahen OM, Huang B, Rippmann FF, Cruciani G, Wade RC.
    J Mol Recognit; 2010 Mar 01; 23(2):209-19. PubMed ID: 19746440
    [Abstract] [Full Text] [Related]

  • 18. Analysis of protein structures reveals regions of rare backbone conformation at functional sites.
    Petock JM, Torshin IY, Weber IT, Harrison RW.
    Proteins; 2003 Dec 01; 53(4):872-9. PubMed ID: 14635129
    [Abstract] [Full Text] [Related]

  • 19. Estimating quality of template-based protein models by alignment stability.
    Chen H, Kihara D.
    Proteins; 2008 May 15; 71(3):1255-74. PubMed ID: 18041762
    [Abstract] [Full Text] [Related]

  • 20. Identification of the ligand binding sites on the molecular surface of proteins.
    Kinoshita K, Nakamura H.
    Protein Sci; 2005 Mar 15; 14(3):711-8. PubMed ID: 15689509
    [Abstract] [Full Text] [Related]

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