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Journal Abstract Search

922 related items for PubMed ID: 18004784

  • 1. Protein structure mining using a structural alphabet.
    Tyagi M, de Brevern AG, Srinivasan N, Offmann B.
    Proteins; 2008 May 01; 71(2):920-37. PubMed ID: 18004784
    [Abstract] [Full Text] [Related]

  • 2. Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.
    Tyagi M, Sharma P, Swamy CS, Cadet F, Srinivasan N, de Brevern AG, Offmann B.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W119-23. PubMed ID: 16844973
    [Abstract] [Full Text] [Related]

  • 3. A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.
    Tyagi M, Gowri VS, Srinivasan N, de Brevern AG, Offmann B.
    Proteins; 2006 Oct 01; 65(1):32-9. PubMed ID: 16894618
    [Abstract] [Full Text] [Related]

  • 4. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
    [Abstract] [Full Text] [Related]

  • 5. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
    [Abstract] [Full Text] [Related]

  • 6. Improvement of protein structure comparison using a structural alphabet.
    Joseph AP, Srinivasan N, de Brevern AG.
    Biochimie; 2011 Sep 18; 93(9):1434-45. PubMed ID: 21569819
    [Abstract] [Full Text] [Related]

  • 7. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):665-78. PubMed ID: 10966776
    [Abstract] [Full Text] [Related]

  • 8. YAKUSA: a fast structural database scanning method.
    Carpentier M, Brouillet S, Pothier J.
    Proteins; 2005 Oct 01; 61(1):137-51. PubMed ID: 16049912
    [Abstract] [Full Text] [Related]

  • 9. HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
    Lin HN, Chang JM, Wu KP, Sung TY, Hsu WL.
    Bioinformatics; 2005 Aug 01; 21(15):3227-33. PubMed ID: 15932901
    [Abstract] [Full Text] [Related]

  • 10. Fast model-based protein homology detection without alignment.
    Hochreiter S, Heusel M, Obermayer K.
    Bioinformatics; 2007 Jul 15; 23(14):1728-36. PubMed ID: 17488755
    [Abstract] [Full Text] [Related]

  • 11. FAST: a novel protein structure alignment algorithm.
    Zhu J, Weng Z.
    Proteins; 2005 Feb 15; 58(3):618-27. PubMed ID: 15609341
    [Abstract] [Full Text] [Related]

  • 12. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
    [Abstract] [Full Text] [Related]

  • 13. DPANN: improved sequence to structure alignments following fold recognition.
    Reinhardt A, Eisenberg D.
    Proteins; 2004 Aug 15; 56(3):528-38. PubMed ID: 15229885
    [Abstract] [Full Text] [Related]

  • 14. LFM-Pro: a tool for detecting significant local structural sites in proteins.
    Sacan A, Ozturk O, Ferhatosmanoglu H, Wang Y.
    Bioinformatics; 2007 Mar 15; 23(6):709-16. PubMed ID: 17237050
    [Abstract] [Full Text] [Related]

  • 15. CAALIGN: a program for pairwise and multiple protein-structure alignment.
    Oldfield TJ.
    Acta Crystallogr D Biol Crystallogr; 2007 Apr 15; 63(Pt 4):514-25. PubMed ID: 17372357
    [Abstract] [Full Text] [Related]

  • 16. Improving fold recognition without folds.
    Przybylski D, Rost B.
    J Mol Biol; 2004 Jul 30; 341(1):255-69. PubMed ID: 15312777
    [Abstract] [Full Text] [Related]

  • 17. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    Shi J, Blundell TL, Mizuguchi K.
    J Mol Biol; 2001 Jun 29; 310(1):243-57. PubMed ID: 11419950
    [Abstract] [Full Text] [Related]

  • 18. Flexible protein alignment and hinge detection.
    Shatsky M, Nussinov R, Wolfson HJ.
    Proteins; 2002 Aug 01; 48(2):242-56. PubMed ID: 12112693
    [Abstract] [Full Text] [Related]

  • 19. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD, Koehl P, Ripp R, Poch O.
    Proteins; 2005 Oct 01; 61(1):127-36. PubMed ID: 16044462
    [Abstract] [Full Text] [Related]

  • 20. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K, Kurgan L.
    Bioinformatics; 2007 Nov 01; 23(21):2843-50. PubMed ID: 17942446
    [Abstract] [Full Text] [Related]

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