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PUBMED FOR HANDHELDS

Journal Abstract Search


277 related items for PubMed ID: 18056736

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  • 3. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H, Tabei Y, Kin T, Asai K.
    Bioinformatics; 2007 Jul 01; 23(13):1588-98. PubMed ID: 17459961
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  • 5. Alignment of RNA base pairing probability matrices.
    Hofacker IL, Bernhart SH, Stadler PF.
    Bioinformatics; 2004 Sep 22; 20(14):2222-7. PubMed ID: 15073017
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  • 6. GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
    Gerlach W, Giegerich R.
    Bioinformatics; 2006 Mar 15; 22(6):762-4. PubMed ID: 16403789
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  • 7. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M, Sato K, Kiryu H, Mituyama T, Asai K.
    Bioinformatics; 2009 Dec 15; 25(24):3236-43. PubMed ID: 19808876
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  • 10. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH.
    Bioinformatics; 2005 May 15; 21(10):2246-53. PubMed ID: 15731207
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  • 12. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y, Tsuda K, Kin T, Asai K.
    Bioinformatics; 2006 Jul 15; 22(14):1723-9. PubMed ID: 16690634
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  • 13. Memory efficient folding algorithms for circular RNA secondary structures.
    Hofacker IL, Stadler PF.
    Bioinformatics; 2006 May 15; 22(10):1172-6. PubMed ID: 16452114
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  • 14. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
    Havgaard JH, Lyngsø RB, Stormo GD, Gorodkin J.
    Bioinformatics; 2005 May 01; 21(9):1815-24. PubMed ID: 15657094
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  • 16. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y, Asai K.
    Bioinformatics; 2009 Jun 15; 25(12):1498-505. PubMed ID: 19376823
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  • 17. Prediction of RNA secondary structure using generalized centroid estimators.
    Hamada M, Kiryu H, Sato K, Mituyama T, Asai K.
    Bioinformatics; 2009 Feb 15; 25(4):465-73. PubMed ID: 19095700
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  • 19. RNA structure alignment by a unit-vector approach.
    Capriotti E, Marti-Renom MA.
    Bioinformatics; 2008 Aug 15; 24(16):i112-8. PubMed ID: 18689811
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  • 20. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB, Woods DA, Batzoglou S.
    Bioinformatics; 2006 Jul 15; 22(14):e90-8. PubMed ID: 16873527
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