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Journal Abstract Search

198 related items for PubMed ID: 18069664

  • 61. Computational protein design: validation and possible relevance as a tool for homology searching and fold recognition.
    Schmidt Am Busch M, Sedano A, Simonson T.
    PLoS One; 2010 May 05; 5(5):e10410. PubMed ID: 20463972
    [Abstract] [Full Text] [Related]

  • 62. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
    Chebaro Y, Dong X, Laghaei R, Derreumaux P, Mousseau N.
    J Phys Chem B; 2009 Jan 08; 113(1):267-74. PubMed ID: 19067549
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  • 63. POEM: Parameter Optimization using Ensemble Methods: application to target specific scoring functions.
    Antes I, Merkwirth C, Lengauer T.
    J Chem Inf Model; 2005 Jan 08; 45(5):1291-302. PubMed ID: 16180906
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  • 64. Role of the amino acid sequence in domain swapping of the B1 domain of protein G.
    Sirota FL, Héry-Huynh S, Maurer-Stroh S, Wodak SJ.
    Proteins; 2008 Jul 08; 72(1):88-104. PubMed ID: 18186476
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  • 65. Calculation of absolute protein-ligand binding constants with the molecular dynamics free energy perturbation method.
    Woo HJ.
    Methods Mol Biol; 2008 Jul 08; 443():109-20. PubMed ID: 18446284
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  • 66. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X, Allen LR, Tamiola K, Mark AE, Paci E.
    J Comput Chem; 2009 May 08; 30(7):1059-68. PubMed ID: 18942730
    [Abstract] [Full Text] [Related]

  • 67. A simple method of estimating sampling consistency based on free energy map distance.
    Son WJ, Jang S, Shin S.
    J Mol Graph Model; 2008 Oct 08; 27(3):321-5. PubMed ID: 18619879
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  • 68. Computer simulations and theory of protein translocation.
    Makarov DE.
    Acc Chem Res; 2009 Feb 17; 42(2):281-9. PubMed ID: 19072704
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  • 69. Evolutionary method for the assembly of rigid protein fragments.
    De Sancho D, Prieto L, Rubio AM, Rey A.
    J Comput Chem; 2005 Jan 30; 26(2):131-41. PubMed ID: 15584079
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  • 70. Maximum feasibility guideline in the design and analysis of protein folding potentials.
    Meller J, Wagner M, Elber R.
    J Comput Chem; 2002 Jan 15; 23(1):111-8. PubMed ID: 11913376
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  • 71. Backbone flexibility in computational protein design.
    Mandell DJ, Kortemme T.
    Curr Opin Biotechnol; 2009 Aug 15; 20(4):420-8. PubMed ID: 19709874
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  • 72. Optimal HP configurations of proteins by combining local search with elastic net algorithm.
    Guo YZ, Feng EM, Wang Y.
    J Biochem Biophys Methods; 2007 Apr 10; 70(3):335-40. PubMed ID: 16982100
    [Abstract] [Full Text] [Related]

  • 73. BALLDock/SLICK: a new method for protein-carbohydrate docking.
    Kerzmann A, Fuhrmann J, Kohlbacher O, Neumann D.
    J Chem Inf Model; 2008 Aug 10; 48(8):1616-25. PubMed ID: 18646839
    [Abstract] [Full Text] [Related]

  • 74. Fold recognition aided by constraints from small angle X-ray scattering data.
    Zheng W, Doniach S.
    Protein Eng Des Sel; 2005 May 10; 18(5):209-19. PubMed ID: 15845555
    [Abstract] [Full Text] [Related]

  • 75. Designing proteins from the inside out.
    Ventura S, Serrano L.
    Proteins; 2004 Jul 01; 56(1):1-10. PubMed ID: 15162481
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  • 76. Thermodynamics and folding pathways of trpzip2: an accelerated molecular dynamics simulation study.
    Yang L, Shao Q, Gao YQ.
    J Phys Chem B; 2009 Jan 22; 113(3):803-8. PubMed ID: 19113829
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  • 77. On the predictability of protein database search complexity and its relevance to optimization of distributed searches.
    Deciu C, Sun J, Wall MA.
    J Proteome Res; 2007 Sep 22; 6(9):3443-8. PubMed ID: 17663575
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  • 78. Protein structure prediction.
    Al-Lazikani B, Hill EE, Morea V.
    Methods Mol Biol; 2008 Sep 22; 453():33-85. PubMed ID: 18712297
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  • 79. Using multi-objective computational design to extend protein promiscuity.
    Suarez M, Tortosa P, Garcia-Mira MM, Rodríguez-Larrea D, Godoy-Ruiz R, Ibarra-Molero B, Sanchez-Ruiz JM, Jaramillo A.
    Biophys Chem; 2010 Mar 22; 147(1-2):13-9. PubMed ID: 20034725
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  • 80. COPid: composition based protein identification.
    Kumar M, Thakur V, Raghava GP.
    In Silico Biol; 2008 Mar 22; 8(2):121-8. PubMed ID: 18928200
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