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Journal Abstract Search

189 related items for PubMed ID: 18154370

  • 21.
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  • 22. Conformation preorganization: effects of S20G mutation on the structure of human islet amyloid polypeptide segment.
    Xu W, Jiang P, Mu Y.
    J Phys Chem B; 2009 May 21; 113(20):7308-14. PubMed ID: 19402658
    [Abstract] [Full Text] [Related]

  • 23. Structures of a peptide fragment of beta2-microglobulin studied by replica-exchange molecular dynamics simulations - towards the understanding of the mechanism of amyloid formation.
    Nishino M, Sugita Y, Yoda T, Okamoto Y.
    FEBS Lett; 2005 Oct 10; 579(24):5425-9. PubMed ID: 16198346
    [Abstract] [Full Text] [Related]

  • 24. Conformational sampling for the impatient.
    Tai K.
    Biophys Chem; 2004 Feb 15; 107(3):213-20. PubMed ID: 14967236
    [Abstract] [Full Text] [Related]

  • 25. Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping.
    Frickenhaus S, Kannan S, Zacharias M.
    J Comput Chem; 2009 Feb 15; 30(3):479-92. PubMed ID: 18680215
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  • 26.
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  • 27. A bias-exchange approach to protein folding.
    Piana S, Laio A.
    J Phys Chem B; 2007 May 03; 111(17):4553-9. PubMed ID: 17419610
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  • 28.
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  • 29. On easy implementation of a variant of the replica exchange with solute tempering in GROMACS.
    Terakawa T, Kameda T, Takada S.
    J Comput Chem; 2011 May 03; 32(7):1228-34. PubMed ID: 21425280
    [Abstract] [Full Text] [Related]

  • 30. Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms.
    Mori T, Miyashita N, Im W, Feig M, Sugita Y.
    Biochim Biophys Acta; 2016 Jul 03; 1858(7 Pt B):1635-51. PubMed ID: 26766517
    [Abstract] [Full Text] [Related]

  • 31.
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  • 32.
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  • 33. Hamiltonian replica exchange molecular dynamics using soft-core interactions.
    Hritz J, Oostenbrink C.
    J Chem Phys; 2008 Apr 14; 128(14):144121. PubMed ID: 18412437
    [Abstract] [Full Text] [Related]

  • 34. Hybrid Hamiltonian replica exchange molecular dynamics simulation method employing the Poisson-Boltzmann model.
    Mu Y, Yang Y, Xu W.
    J Chem Phys; 2007 Aug 28; 127(8):084119. PubMed ID: 17764241
    [Abstract] [Full Text] [Related]

  • 35.
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  • 36. Efficient Conformational Sampling in Explicit Solvent Using a Hybrid Replica Exchange Molecular Dynamics Method.
    Chaudhury S, Olson MA, Tawa G, Wallqvist A, Lee MS.
    J Chem Theory Comput; 2012 Feb 14; 8(2):677-87. PubMed ID: 26596615
    [Abstract] [Full Text] [Related]

  • 37. Optimized parallel tempering simulations of proteins.
    Trebst S, Troyer M, Hansmann UH.
    J Chem Phys; 2006 May 07; 124(17):174903. PubMed ID: 16689600
    [Abstract] [Full Text] [Related]

  • 38.
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  • 39. Multidimensional generalized-ensemble algorithms for complex systems.
    Mitsutake A, Okamoto Y.
    J Chem Phys; 2009 Jun 07; 130(21):214105. PubMed ID: 19508054
    [Abstract] [Full Text] [Related]

  • 40. Coulomb replica-exchange method: handling electrostatic attractive and repulsive forces for biomolecules.
    Itoh SG, Okumura H.
    J Comput Chem; 2013 Mar 30; 34(8):622-39. PubMed ID: 23197415
    [Abstract] [Full Text] [Related]

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