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Journal Abstract Search

145 related items for PubMed ID: 18229695

  • 1. Global alignment of multiple protein interaction networks.
    Singh R, Xu J, Berger B.
    Pac Symp Biocomput; 2008; ():303-14. PubMed ID: 18229695
    [Abstract] [Full Text] [Related]

  • 2. Global alignment of multiple protein interaction networks with application to functional orthology detection.
    Singh R, Xu J, Berger B.
    Proc Natl Acad Sci U S A; 2008 Sep 02; 105(35):12763-8. PubMed ID: 18725631
    [Abstract] [Full Text] [Related]

  • 3. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Sep 02; 939():21-34. PubMed ID: 23192538
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  • 4. Pairwise alignment of protein interaction networks.
    Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.
    J Comput Biol; 2006 Mar 02; 13(2):182-99. PubMed ID: 16597234
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  • 5. Conserved patterns of protein interaction in multiple species.
    Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P, Sittler T, Karp RM, Ideker T.
    Proc Natl Acad Sci U S A; 2005 Feb 08; 102(6):1974-9. PubMed ID: 15687504
    [Abstract] [Full Text] [Related]

  • 6. IsoBase: a database of functionally related proteins across PPI networks.
    Park D, Singh R, Baym M, Liao CS, Berger B.
    Nucleic Acids Res; 2011 Jan 08; 39(Database issue):D295-300. PubMed ID: 21177658
    [Abstract] [Full Text] [Related]

  • 7. Systems biology approach reveals possible evolutionarily conserved moonlighting functions for enolase.
    Paludo GP, Lorenzatto KR, Bonatto D, Ferreira HB.
    Comput Biol Chem; 2015 Oct 08; 58():1-8. PubMed ID: 25978602
    [Abstract] [Full Text] [Related]

  • 8. Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
    Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F.
    Proteomics; 2006 Jan 08; 6(2):456-61. PubMed ID: 16317777
    [Abstract] [Full Text] [Related]

  • 9. Local optimization for global alignment of protein interaction networks.
    Chindelevitch L, Liao CS, Berger B.
    Pac Symp Biocomput; 2010 Jan 08; ():123-32. PubMed ID: 19908365
    [Abstract] [Full Text] [Related]

  • 10. Identification of protein complexes by integrating multiple alignment of protein interaction networks.
    Ma CY, Chen YP, Berger B, Liao CS.
    Bioinformatics; 2017 Jun 01; 33(11):1681-1688. PubMed ID: 28130237
    [Abstract] [Full Text] [Related]

  • 11. Modeling interactome: scale-free or geometric?
    Przulj N, Corneil DG, Jurisica I.
    Bioinformatics; 2004 Dec 12; 20(18):3508-15. PubMed ID: 15284103
    [Abstract] [Full Text] [Related]

  • 12. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 13. Protein complex prediction via cost-based clustering.
    King AD, Przulj N, Jurisica I.
    Bioinformatics; 2004 Nov 22; 20(17):3013-20. PubMed ID: 15180928
    [Abstract] [Full Text] [Related]

  • 14. Learning the structure of protein-protein interaction networks.
    Kuchaiev O, Przulj N.
    Pac Symp Biocomput; 2009 Nov 22; ():39-50. PubMed ID: 19209694
    [Abstract] [Full Text] [Related]

  • 15. k-Partite cliques of protein interactions: A novel subgraph topology for functional coherence analysis on PPI networks.
    Liu Q, Chen YP, Li J.
    J Theor Biol; 2014 Jan 07; 340():146-54. PubMed ID: 24056214
    [Abstract] [Full Text] [Related]

  • 16. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 17. HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks.
    Hashemifar S, Xu J.
    Bioinformatics; 2014 Sep 01; 30(17):i438-44. PubMed ID: 25161231
    [Abstract] [Full Text] [Related]

  • 18. Pairwise alignment of interaction networks by fast identification of maximal conserved patterns.
    Tian W, Samatova NF.
    Pac Symp Biocomput; 2009 Sep 01; ():99-110. PubMed ID: 19209698
    [Abstract] [Full Text] [Related]

  • 19. C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks.
    Memišević V, Pržulj N.
    Integr Biol (Camb); 2012 Jul 01; 4(7):734-43. PubMed ID: 22234340
    [Abstract] [Full Text] [Related]

  • 20. A linear-time algorithm for predicting functional annotations from PPI networks.
    Wu Y, Lonardi S.
    J Bioinform Comput Biol; 2008 Dec 01; 6(6):1049-65. PubMed ID: 19090017
    [Abstract] [Full Text] [Related]

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