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Journal Abstract Search

451 related items for PubMed ID: 18237194

  • 1. P22 c2 repressor-operator complex: mechanisms of direct and indirect readout.
    Watkins D, Hsiao C, Woods KK, Koudelka GB, Williams LD.
    Biochemistry; 2008 Feb 26; 47(8):2325-38. PubMed ID: 18237194
    [Abstract] [Full Text] [Related]

  • 2. Sequence recognition of DNA by protein-induced conformational transitions.
    Watkins D, Mohan S, Koudelka GB, Williams LD.
    J Mol Biol; 2010 Mar 05; 396(4):1145-64. PubMed ID: 20053356
    [Abstract] [Full Text] [Related]

  • 3. Indirect readout of DNA sequence by p22 repressor: roles of DNA and protein functional groups in modulating DNA conformation.
    Harris LA, Watkins D, Williams LD, Koudelka GB.
    J Mol Biol; 2013 Jan 09; 425(1):133-43. PubMed ID: 23085222
    [Abstract] [Full Text] [Related]

  • 4. Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution.
    Albright RA, Matthews BW.
    J Mol Biol; 1998 Jul 03; 280(1):137-51. PubMed ID: 9653037
    [Abstract] [Full Text] [Related]

  • 5. The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions.
    Glasfeld A, Koehler AN, Schumacher MA, Brennan RG.
    J Mol Biol; 1999 Aug 13; 291(2):347-61. PubMed ID: 10438625
    [Abstract] [Full Text] [Related]

  • 6. Crystallographic analysis of Lac repressor bound to natural operator O1.
    Bell CE, Lewis M.
    J Mol Biol; 2001 Oct 05; 312(5):921-6. PubMed ID: 11580238
    [Abstract] [Full Text] [Related]

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  • 8. Arc repressor-operator DNA interactions and contribution of Phe10 to binding specificity.
    Dostál L, Misselwitz R, Welfle H.
    Biochemistry; 2005 Jun 14; 44(23):8387-96. PubMed ID: 15938628
    [Abstract] [Full Text] [Related]

  • 9. Water-mediated contacts in the trp-repressor operator complex recognition process.
    Wibowo FR, Rauch C, Trieb M, Wellenzohn B, Liedl KR.
    Biopolymers; 2004 Apr 15; 73(6):668-81. PubMed ID: 15048770
    [Abstract] [Full Text] [Related]

  • 10. An aromatic stacking interaction between subunits helps mediate DNA sequence specificity: operator site discrimination by phage lambda cI repressor.
    Huang YT, Rusinova E, Ross JB, Senear DF.
    J Mol Biol; 1997 Mar 28; 267(2):403-17. PubMed ID: 9096234
    [Abstract] [Full Text] [Related]

  • 11. Determinants of repressor/operator recognition from the structure of the trp operator binding site.
    Shakked Z, Guzikevich-Guerstein G, Frolow F, Rabinovich D, Joachimiak A, Sigler PB.
    Nature; 1994 Mar 31; 368(6470):469-73. PubMed ID: 8133895
    [Abstract] [Full Text] [Related]

  • 12. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking.
    Chen S, Gunasekera A, Zhang X, Kunkel TA, Ebright RH, Berman HM.
    J Mol Biol; 2001 Nov 16; 314(1):75-82. PubMed ID: 11724533
    [Abstract] [Full Text] [Related]

  • 13. The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove.
    Wojciak JM, Iwahara J, Clubb RT.
    Nat Struct Biol; 2001 Jan 16; 8(1):84-90. PubMed ID: 11135677
    [Abstract] [Full Text] [Related]

  • 14. A-form conformational motifs in ligand-bound DNA structures.
    Lu XJ, Shakked Z, Olson WK.
    J Mol Biol; 2000 Jul 21; 300(4):819-40. PubMed ID: 10891271
    [Abstract] [Full Text] [Related]

  • 15. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.
    J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632
    [Abstract] [Full Text] [Related]

  • 16. Molecular dynamics simulation in solvent of the bacteriophage 434 cI repressor protein DNA binding domain amino acids (R1-69) in complex with its cognate operator (OR1) DNA sequence.
    Harris LF, Sullivan MR, Popken-Harris PD.
    J Biomol Struct Dyn; 1999 Aug 02; 17(1):1-17. PubMed ID: 10496417
    [Abstract] [Full Text] [Related]

  • 17. Molecular dynamics simulation reveals sequence-intrinsic and protein-induced geometrical features of the OL1 DNA operator.
    Kombo DC, McConnell KJ, Young MA, Beveridge DL.
    Biopolymers; 2001 Oct 05; 59(4):205-25. PubMed ID: 11473347
    [Abstract] [Full Text] [Related]

  • 18. The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators.
    Wang H, Glansdorff N, Charlier D.
    J Mol Biol; 1998 Apr 10; 277(4):805-24. PubMed ID: 9545374
    [Abstract] [Full Text] [Related]

  • 19. Water-mediated interactions in the CRP-cAMP-DNA complex: does water mediate sequence-specific binding at the DNA primary-kink site?
    VanSchouwen BM, Gordon HL, Rothstein SM, Komeiji Y, Fukuzawa K, Tanaka S.
    Comput Biol Chem; 2008 Jun 10; 32(3):149-58. PubMed ID: 18356111
    [Abstract] [Full Text] [Related]

  • 20. Conformational flexibility of B-DNA at 0.74 A resolution: d(CCAGTACTGG)(2).
    Kielkopf CL, Ding S, Kuhn P, Rees DC.
    J Mol Biol; 2000 Feb 25; 296(3):787-801. PubMed ID: 10677281
    [Abstract] [Full Text] [Related]

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