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Journal Abstract Search

192 related items for PubMed ID: 18247351

  • 1.
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  • 2. Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics.
    Morra G, Baragli C, Colombo G.
    Biophys Chem; 2010 Feb; 146(2-3):76-84. PubMed ID: 19926206
    [Abstract] [Full Text] [Related]

  • 3. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
    Badasyan A, Liu Z, Chan HS.
    J Mol Biol; 2008 Dec 12; 384(2):512-30. PubMed ID: 18823994
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  • 5. Local interactions in protein folding determined through an inverse folding model.
    Bastolla U, Porto M, Ortíz AR.
    Proteins; 2008 Apr 12; 71(1):278-99. PubMed ID: 17932940
    [Abstract] [Full Text] [Related]

  • 6. Recognizing native folds by the arrangement of hydrophobic and polar residues.
    Huang ES, Subbiah S, Levitt M.
    J Mol Biol; 1995 Oct 06; 252(5):709-20. PubMed ID: 7563083
    [Abstract] [Full Text] [Related]

  • 7. Physical origins of protein superfamilies.
    Zeldovich KB, Berezovsky IN, Shakhnovich EI.
    J Mol Biol; 2006 Apr 07; 357(4):1335-43. PubMed ID: 16483605
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  • 9. Large-scale prediction of protein geometry and stability changes for arbitrary single point mutations.
    Bordner AJ, Abagyan RA.
    Proteins; 2004 Nov 01; 57(2):400-13. PubMed ID: 15340927
    [Abstract] [Full Text] [Related]

  • 10. Understanding the role of the topology in protein folding by computational inverse folding experiments.
    Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G.
    Comput Biol Chem; 2008 Aug 01; 32(4):233-9. PubMed ID: 18479970
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  • 12. Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies.
    Sun W, He J.
    Proteins; 2009 Oct 01; 77(1):159-73. PubMed ID: 19415754
    [Abstract] [Full Text] [Related]

  • 13. Protein designability analysis in sequence principal component space using 2D lattice model.
    Li ZR, Han X, Liu GR.
    Comput Methods Programs Biomed; 2004 Oct 01; 76(1):21-9. PubMed ID: 15313539
    [Abstract] [Full Text] [Related]

  • 14. Simulating protein evolution in sequence and structure space.
    Xia Y, Levitt M.
    Curr Opin Struct Biol; 2004 Apr 01; 14(2):202-7. PubMed ID: 15093835
    [Abstract] [Full Text] [Related]

  • 15. The determinants of stability in the human prion protein: insights into folding and misfolding from the analysis of the change in the stabilization energy distribution in different conditions.
    Colacino S, Tiana G, Broglia RA, Colombo G.
    Proteins; 2006 Mar 15; 62(3):698-707. PubMed ID: 16432880
    [Abstract] [Full Text] [Related]

  • 16. All-atom ab initio native structure prediction of a mixed fold (1FME): a comparison of structural and folding characteristics of various beta beta alpha miniproteins.
    Kim E, Jang S, Pak Y.
    J Chem Phys; 2009 Nov 21; 131(19):195102. PubMed ID: 19929079
    [Abstract] [Full Text] [Related]

  • 17. Evolution and similarity evaluation of protein structures in contact map space.
    Gupta N, Mangal N, Biswas S.
    Proteins; 2005 May 01; 59(2):196-204. PubMed ID: 15726585
    [Abstract] [Full Text] [Related]

  • 18. Identifying folding nucleus based on residue contact networks of proteins.
    Li J, Wang J, Wang W.
    Proteins; 2008 Jun 01; 71(4):1899-907. PubMed ID: 18175318
    [Abstract] [Full Text] [Related]

  • 19. Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development.
    Parthiban V, Gromiha MM, Abhinandan M, Schomburg D.
    BMC Struct Biol; 2007 Aug 16; 7():54. PubMed ID: 17705837
    [Abstract] [Full Text] [Related]

  • 20. Principal eigenvector of contact matrices and hydrophobicity profiles in proteins.
    Bastolla U, Porto M, Roman HE, Vendruscolo M.
    Proteins; 2005 Jan 01; 58(1):22-30. PubMed ID: 15523667
    [Abstract] [Full Text] [Related]

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