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Journal Abstract Search

238 related items for PubMed ID: 18312146

  • 1. Sequence alignment with an appropriate substitution matrix.
    Huang X.
    J Comput Biol; 2008 Mar; 15(2):129-38. PubMed ID: 18312146
    [Abstract] [Full Text] [Related]

  • 2. Dynamic use of multiple parameter sets in sequence alignment.
    Huang X, Brutlag DL.
    Nucleic Acids Res; 2007 Mar; 35(2):678-86. PubMed ID: 17182633
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  • 4. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A, Hazelhurst S, Durand PM.
    BMC Bioinformatics; 2015 Aug 14; 16():255. PubMed ID: 26269100
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  • 7. The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion.
    Polyanovsky V, Lifanov A, Esipova N, Tumanyan V.
    BMC Bioinformatics; 2020 Sep 14; 21(Suppl 11):294. PubMed ID: 32921315
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  • 9. Empirical determination of effective gap penalties for sequence comparison.
    Reese JT, Pearson WR.
    Bioinformatics; 2002 Nov 14; 18(11):1500-7. PubMed ID: 12424122
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  • 10. Empirical models for substitution in ribosomal RNA.
    Smith AD, Lui TW, Tillier ER.
    Mol Biol Evol; 2004 Mar 14; 21(3):419-27. PubMed ID: 14660689
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  • 11. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM, Bystroff C.
    Bioinformatics; 2006 Feb 15; 22(4):413-22. PubMed ID: 16352653
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  • 13. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited.
    Vogt G, Etzold T, Argos P.
    J Mol Biol; 1995 Jun 16; 249(4):816-31. PubMed ID: 7602593
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  • 15. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Thompson JD, Higgins DG, Gibson TJ.
    Nucleic Acids Res; 1994 Nov 11; 22(22):4673-80. PubMed ID: 7984417
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  • 16. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL, Hollich V.
    BMC Bioinformatics; 2005 Apr 27; 6():108. PubMed ID: 15857510
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  • 17. Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
    Morgenstern B, Dress A, Werner T.
    Proc Natl Acad Sci U S A; 1996 Oct 29; 93(22):12098-103. PubMed ID: 8901539
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  • 18. ALIGN_MTX--an optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignment.
    Vishnepolsky B, Pirtskhalava M.
    Comput Biol Chem; 2009 Jun 29; 33(3):235-8. PubMed ID: 19477686
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  • 19. Improving sequence alignments for intrinsically disordered proteins.
    Radivojac P, Obradovic Z, Brown CJ, Dunker AK.
    Pac Symp Biocomput; 2002 Jun 29; ():589-600. PubMed ID: 11928510
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  • 20. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
    [Abstract] [Full Text] [Related]

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