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Journal Abstract Search

257 related items for PubMed ID: 18320591

  • 1. All-atom replica exchange molecular simulation of protein BBL.
    Zhang J, Li W, Wang J, Qin M, Wang W.
    Proteins; 2008 Aug 15; 72(3):1038-47. PubMed ID: 18320591
    [Abstract] [Full Text] [Related]

  • 2. Experimental identification of downhill protein folding.
    Garcia-Mira MM, Sadqi M, Fischer N, Sanchez-Ruiz JM, Muñoz V.
    Science; 2002 Dec 13; 298(5601):2191-5. PubMed ID: 12481137
    [Abstract] [Full Text] [Related]

  • 3. Structural biology: analysis of protein-folding cooperativity.
    Zhou Z, Bai Y.
    Nature; 2007 Feb 15; 445(7129):E16-7; discussion E17-8. PubMed ID: 17301743
    [Abstract] [Full Text] [Related]

  • 4. One-state downhill versus conventional protein folding.
    Ferguson N, Schartau PJ, Sharpe TD, Sato S, Fersht AR.
    J Mol Biol; 2004 Nov 19; 344(2):295-301. PubMed ID: 15522284
    [Abstract] [Full Text] [Related]

  • 5. The nature of the free energy barriers to two-state folding.
    Akmal A, Muñoz V.
    Proteins; 2004 Oct 01; 57(1):142-52. PubMed ID: 15326600
    [Abstract] [Full Text] [Related]

  • 6. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
    [Abstract] [Full Text] [Related]

  • 7. Reversible folding simulation by hybrid Hamiltonian replica exchange.
    Xu W, Lai T, Yang Y, Mu Y.
    J Chem Phys; 2008 May 07; 128(17):175105. PubMed ID: 18465944
    [Abstract] [Full Text] [Related]

  • 8. Folding with downhill behavior and low cooperativity of proteins.
    Zuo G, Wang J, Wang W.
    Proteins; 2006 Apr 01; 63(1):165-73. PubMed ID: 16416404
    [Abstract] [Full Text] [Related]

  • 9. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH, Stock G, Mittag E, Hu CK, Li MS.
    Proteins; 2005 Dec 01; 61(4):795-808. PubMed ID: 16240446
    [Abstract] [Full Text] [Related]

  • 10. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X, Allen LR, Tamiola K, Mark AE, Paci E.
    J Comput Chem; 2009 May 01; 30(7):1059-68. PubMed ID: 18942730
    [Abstract] [Full Text] [Related]

  • 11. Dissociation aided and side chain sampling enhanced Hamiltonian replica exchange.
    Mu Y.
    J Chem Phys; 2009 Apr 28; 130(16):164107. PubMed ID: 19405561
    [Abstract] [Full Text] [Related]

  • 12. Atom-by-atom analysis of global downhill protein folding.
    Sadqi M, Fushman D, Muñoz V.
    Nature; 2006 Jul 20; 442(7100):317-21. PubMed ID: 16799571
    [Abstract] [Full Text] [Related]

  • 13. Thermodynamics of downhill folding: multi-probe analysis of PDD, a protein that folds over a marginal free energy barrier.
    Naganathan AN, Muñoz V.
    J Phys Chem B; 2014 Jul 31; 118(30):8982-94. PubMed ID: 24988372
    [Abstract] [Full Text] [Related]

  • 14. Exploring the protein folding free energy landscape: coupling replica exchange method with P3ME/RESPA algorithm.
    Zhou R.
    J Mol Graph Model; 2004 May 31; 22(5):451-63. PubMed ID: 15099840
    [Abstract] [Full Text] [Related]

  • 15. Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model.
    Mitomo D, Nakamura HK, Ikeda K, Yamagishi A, Higo J.
    Proteins; 2006 Sep 01; 64(4):883-94. PubMed ID: 16807919
    [Abstract] [Full Text] [Related]

  • 16. Thermodynamics and folding pathways of trpzip2: an accelerated molecular dynamics simulation study.
    Yang L, Shao Q, Gao YQ.
    J Phys Chem B; 2009 Jan 22; 113(3):803-8. PubMed ID: 19113829
    [Abstract] [Full Text] [Related]

  • 17. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH, Mu Y, Stock G.
    Proteins; 2005 Aug 15; 60(3):485-94. PubMed ID: 15977160
    [Abstract] [Full Text] [Related]

  • 18. A bias-exchange approach to protein folding.
    Piana S, Laio A.
    J Phys Chem B; 2007 May 03; 111(17):4553-9. PubMed ID: 17419610
    [Abstract] [Full Text] [Related]

  • 19. Robustness of downhill folding: guidelines for the analysis of equilibrium folding experiments on small proteins.
    Naganathan AN, Perez-Jimenez R, Sanchez-Ruiz JM, Muñoz V.
    Biochemistry; 2005 May 24; 44(20):7435-49. PubMed ID: 15895987
    [Abstract] [Full Text] [Related]

  • 20. Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family.
    Ferguson N, Sharpe TD, Schartau PJ, Sato S, Allen MD, Johnson CM, Rutherford TJ, Fersht AR.
    J Mol Biol; 2005 Oct 21; 353(2):427-46. PubMed ID: 16168437
    [Abstract] [Full Text] [Related]

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