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Journal Abstract Search

257 related items for PubMed ID: 18320591

  • 21. Free energy surfaces of miniproteins with a betabetaalpha motif: replica exchange molecular dynamics simulation with an implicit solvation model.
    Jang S, Kim E, Pak Y.
    Proteins; 2006 Mar 15; 62(3):663-71. PubMed ID: 16329109
    [Abstract] [Full Text] [Related]

  • 22. Understanding protein folding cooperativity based on topological consideration.
    Wu L, Li WF, Liu F, Zhang J, Wang J, Wang W.
    J Chem Phys; 2009 Aug 14; 131(6):065105. PubMed ID: 19691415
    [Abstract] [Full Text] [Related]

  • 23. Topography of the free-energy landscape probed via mechanical unfolding of proteins.
    Kirmizialtin S, Huang L, Makarov DE.
    J Chem Phys; 2005 Jun 15; 122(23):234915. PubMed ID: 16008495
    [Abstract] [Full Text] [Related]

  • 24. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
    Paschek D, Nymeyer H, García AE.
    J Struct Biol; 2007 Mar 15; 157(3):524-33. PubMed ID: 17293125
    [Abstract] [Full Text] [Related]

  • 25. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
    Badasyan A, Liu Z, Chan HS.
    J Mol Biol; 2008 Dec 12; 384(2):512-30. PubMed ID: 18823994
    [Abstract] [Full Text] [Related]

  • 26. Folding kinetics of proteins and cold denaturation.
    Collet O.
    J Chem Phys; 2008 Oct 21; 129(15):155101. PubMed ID: 19045231
    [Abstract] [Full Text] [Related]

  • 27. The free energy landscape analysis of protein (FIP35) folding dynamics.
    Krivov SV.
    J Phys Chem B; 2011 Oct 27; 115(42):12315-24. PubMed ID: 21902225
    [Abstract] [Full Text] [Related]

  • 28. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model.
    Jang S, Kim E, Pak Y.
    Proteins; 2007 Jan 01; 66(1):53-60. PubMed ID: 17063490
    [Abstract] [Full Text] [Related]

  • 29. Statistical mechanics of helix bundles using a dynamic programming approach.
    Lucas A, Huang L, Joshi A, Dill KA.
    J Am Chem Soc; 2007 Apr 11; 129(14):4272-81. PubMed ID: 17362002
    [Abstract] [Full Text] [Related]

  • 30. A simple thermodynamic test to discriminate between two-state and downhill folding.
    Oliva FY, Muñoz V.
    J Am Chem Soc; 2004 Jul 21; 126(28):8596-7. PubMed ID: 15250680
    [Abstract] [Full Text] [Related]

  • 31. Local-structural diversity and protein folding: application to all-beta off-lattice protein models.
    Pan PW, Gordon HL, Rothstein SM.
    J Chem Phys; 2006 Jan 14; 124(2):024905. PubMed ID: 16422646
    [Abstract] [Full Text] [Related]

  • 32. Configuration-dependent diffusion dynamics of downhill and two-state protein folding.
    Xu W, Lai Z, Oliveira RJ, Leite VB, Wang J.
    J Phys Chem B; 2012 May 03; 116(17):5152-9. PubMed ID: 22497604
    [Abstract] [Full Text] [Related]

  • 33. Criteria for downhill protein folding: calorimetry, chevron plot, kinetic relaxation, and single-molecule radius of gyration in chain models with subdued degrees of cooperativity.
    Knott M, Chan HS.
    Proteins; 2006 Nov 01; 65(2):373-91. PubMed ID: 16909416
    [Abstract] [Full Text] [Related]

  • 34. Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent.
    Periole X, Mark AE.
    J Chem Phys; 2007 Jan 07; 126(1):014903. PubMed ID: 17212515
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  • 35. Navigation and analysis of the energy landscape of small proteins using the activation-relaxation technique.
    Mousseau N, Derreumaux P, Gilbert G.
    Phys Biol; 2005 Nov 09; 2(4):S101-7. PubMed ID: 16280615
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  • 36. Effective stochastic dynamics on a protein folding energy landscape.
    Yang S, Onuchic JN, Levine H.
    J Chem Phys; 2006 Aug 07; 125(5):054910. PubMed ID: 16942260
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  • 37. Observation of two families of folding pathways of BBL.
    Fan J, Duan M, Li DW, Wu H, Yang H, Han L, Huo S.
    Biophys J; 2011 May 18; 100(10):2457-65. PubMed ID: 21575580
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  • 38. Multidimensional theory of protein folding.
    Itoh K, Sasai M.
    J Chem Phys; 2009 Apr 14; 130(14):145104. PubMed ID: 19368477
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  • 39. Energy landscape of the trpzip2 peptide.
    Nymeyer H.
    J Phys Chem B; 2009 Jun 18; 113(24):8288-95. PubMed ID: 19469524
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  • 40. A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling.
    Kou SC, Oh J, Wong WH.
    J Chem Phys; 2006 Jun 28; 124(24):244903. PubMed ID: 16821999
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