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545 related items for PubMed ID: 18343699

  • 1. Self-contacts in Asx and Glx residues of high-resolution protein structures: role of local environment and tertiary interactions.
    Pal TK, Sankararamakrishnan R.
    J Mol Graph Model; 2008 Aug; 27(1):20-33. PubMed ID: 18343699
    [Abstract] [Full Text] [Related]

  • 2. Quantum chemical investigations on intraresidue carbonyl-carbonyl contacts in aspartates of high-resolution protein structures.
    Pal TK, Sankararamakrishnan R.
    J Phys Chem B; 2010 Jan 21; 114(2):1038-49. PubMed ID: 20039723
    [Abstract] [Full Text] [Related]

  • 3. A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to residues ahead in sequence: their occurrence at alpha-helical N termini and in other situations.
    Wan WY, Milner-White EJ.
    J Mol Biol; 1999 Mar 12; 286(5):1633-49. PubMed ID: 10064720
    [Abstract] [Full Text] [Related]

  • 4. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S, Saven JG.
    Proteins; 2005 Aug 15; 60(3):450-63. PubMed ID: 15937899
    [Abstract] [Full Text] [Related]

  • 5. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F.
    J Mol Biol; 2000 Jul 28; 300(5):1335-59. PubMed ID: 10903873
    [Abstract] [Full Text] [Related]

  • 6. Conformational analysis of carboxylate and carboxamide side-chains bound to cations.
    Chakrabarti P.
    J Mol Biol; 1994 Jun 03; 239(2):306-14. PubMed ID: 7910853
    [Abstract] [Full Text] [Related]

  • 7. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K, Ramakumar S.
    Proteins; 2004 Sep 01; 56(4):768-81. PubMed ID: 15281129
    [Abstract] [Full Text] [Related]

  • 8. Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities.
    Vijayakumar M, Qian H, Zhou HX.
    Proteins; 1999 Mar 01; 34(4):497-507. PubMed ID: 10081962
    [Abstract] [Full Text] [Related]

  • 9. Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures.
    Eswar N, Ramakrishnan C.
    Protein Eng; 2000 Apr 01; 13(4):227-38. PubMed ID: 10810153
    [Abstract] [Full Text] [Related]

  • 10. A recurring two-hydrogen-bond motif incorporating a serine or threonine residue is found both at alpha-helical N termini and in other situations.
    Wan WY, Milner-White EJ.
    J Mol Biol; 1999 Mar 12; 286(5):1651-62. PubMed ID: 10064721
    [Abstract] [Full Text] [Related]

  • 11.
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    [No Abstract] [Full Text] [Related]

  • 12. Patterns in ionizable side chain interactions in protein structures.
    Gandini D, Gogioso L, Bolognesi M, Bordo D.
    Proteins; 1996 Apr 12; 24(4):439-49. PubMed ID: 9162945
    [Abstract] [Full Text] [Related]

  • 13. Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.
    Russell RB, Barton GJ.
    J Mol Biol; 1994 Dec 02; 244(3):332-50. PubMed ID: 7966343
    [Abstract] [Full Text] [Related]

  • 14. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
    Word JM, Lovell SC, Richardson JS, Richardson DC.
    J Mol Biol; 1999 Jan 29; 285(4):1735-47. PubMed ID: 9917408
    [Abstract] [Full Text] [Related]

  • 15. Statistical analysis of atomic contacts at RNA-protein interfaces.
    Treger M, Westhof E.
    J Mol Recognit; 2001 Jan 29; 14(4):199-214. PubMed ID: 11500966
    [Abstract] [Full Text] [Related]

  • 16. [Systematic analysis of buried polar side chains and their interactions in alpha-helical proteins].
    Kondratova MS, Efimov AV.
    Mol Biol (Mosk); 2002 Jan 29; 36(1):144-51. PubMed ID: 11862705
    [Abstract] [Full Text] [Related]

  • 17. Tolerance to the substitution of buried apolar residues by charged residues in the homologous protein structures.
    Balaji S, Aruna S, Srinivasan N.
    Proteins; 2003 Dec 01; 53(4):783-91. PubMed ID: 14635121
    [Abstract] [Full Text] [Related]

  • 18. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
    Adamian L, Liang J.
    J Mol Biol; 2001 Aug 24; 311(4):891-907. PubMed ID: 11518538
    [Abstract] [Full Text] [Related]

  • 19. A logical OR redundancy within the Asx-Pro-Asx-Gly type I beta-turn motif.
    Lee J, Dubey VK, Longo LM, Blaber M.
    J Mol Biol; 2008 Apr 04; 377(4):1251-64. PubMed ID: 18308335
    [Abstract] [Full Text] [Related]

  • 20. Environment of tryptophan side chains in proteins.
    Samanta U, Pal D, Chakrabarti P.
    Proteins; 2000 Feb 15; 38(3):288-300. PubMed ID: 10713989
    [Abstract] [Full Text] [Related]

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