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Journal Abstract Search

131 related items for PubMed ID: 18373361

  • 1. Knowledge-based potential for the polypeptide backbone.
    Betancourt MR.
    J Phys Chem B; 2008 Apr 24; 112(16):5058-69. PubMed ID: 18373361
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  • 2. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK, Liwo A, Scheraga HA.
    J Chem Phys; 2007 Oct 21; 127(15):155103. PubMed ID: 17949219
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  • 3. Local propensities and statistical potentials of backbone dihedral angles in proteins.
    Betancourt MR, Skolnick J.
    J Mol Biol; 2004 Sep 10; 342(2):635-49. PubMed ID: 15327961
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  • 4. Efficient Monte Carlo trial moves for polypeptide simulations.
    Betancourt MR.
    J Chem Phys; 2005 Nov 01; 123(17):174905. PubMed ID: 16375567
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  • 5. Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.
    Fitzgerald JE, Jha AK, Sosnick TR, Freed KF.
    Biochemistry; 2007 Jan 23; 46(3):669-82. PubMed ID: 17223689
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  • 6. Refining the description of peptide backbone conformations improves protein simulations using the GROMOS 53A6 force field.
    Cao Z, Lin Z, Wang J, Liu H.
    J Comput Chem; 2009 Mar 23; 30(4):645-60. PubMed ID: 18780355
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  • 9. Pairwise energies for polypeptide coarse-grained models derived from atomic force fields.
    Betancourt MR, Omovie SJ.
    J Chem Phys; 2009 May 21; 130(19):195103. PubMed ID: 19466867
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  • 14. Estimation and use of protein backbone angle probabilities.
    Kang HS, Kurochkina NA, Lee B.
    J Mol Biol; 1993 Jan 20; 229(2):448-60. PubMed ID: 8429556
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  • 19. Partial multicanonical algorithm for molecular dynamics and Monte Carlo simulations.
    Okumura H.
    J Chem Phys; 2008 Sep 28; 129(12):124116. PubMed ID: 19045015
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  • 20. Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping.
    Frickenhaus S, Kannan S, Zacharias M.
    J Comput Chem; 2009 Feb 28; 30(3):479-92. PubMed ID: 18680215
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