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Journal Abstract Search

470 related items for PubMed ID: 18378442

  • 1. Transition networks for modeling the kinetics of conformational change in macromolecules.
    Noé F, Fischer S.
    Curr Opin Struct Biol; 2008 Apr; 18(2):154-62. PubMed ID: 18378442
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  • 2. Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states.
    Noé F, Horenko I, Schütte C, Smith JC.
    J Chem Phys; 2007 Apr 21; 126(15):155102. PubMed ID: 17461666
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  • 5. Direct determination of reaction paths and stationary points on potential of mean force surfaces.
    Li G, Cui Q.
    J Mol Graph Model; 2005 Oct 21; 24(2):82-93. PubMed ID: 16005650
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  • 9. Asymmetric bridging of interconnected pores by encased semiflexible macromolecules.
    Cifra P.
    J Chem Phys; 2006 Jan 14; 124(2):024706. PubMed ID: 16422625
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  • 11. Minimum free energy pathways and free energy profiles for conformational transitions based on atomistic molecular dynamics simulations.
    van der Vaart A, Karplus M.
    J Chem Phys; 2007 Apr 28; 126(16):164106. PubMed ID: 17477588
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  • 14. Estimating kinetic rates from accelerated molecular dynamics simulations: alanine dipeptide in explicit solvent as a case study.
    de Oliveira CA, Hamelberg D, McCammon JA.
    J Chem Phys; 2007 Nov 07; 127(17):175105. PubMed ID: 17994855
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  • 15. Exploring reaction pathways with transition path and umbrella sampling: application to methyl maltoside.
    Dimelow RJ, Bryce RA, Masters AJ, Hillier IH, Burton NA.
    J Chem Phys; 2006 Mar 21; 124(11):114113. PubMed ID: 16555880
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  • 16. Energy landscapes: some new horizons.
    Wales DJ.
    Curr Opin Struct Biol; 2010 Feb 21; 20(1):3-10. PubMed ID: 20096562
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  • 17. ETNA: equilibrium transitions network and Arrhenius equation for extracting folding kinetics from REMD simulations.
    Muff S, Caflisch A.
    J Phys Chem B; 2009 Mar 12; 113(10):3218-26. PubMed ID: 19231819
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  • 19. Two-dimensional reaction free energy surfaces of catalytic reaction: effects of protein conformational dynamics on enzyme catalysis.
    Min W, Xie XS, Bagchi B.
    J Phys Chem B; 2008 Jan 17; 112(2):454-66. PubMed ID: 18085768
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