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Journal Abstract Search

215 related items for PubMed ID: 18384072

  • 1. Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.
    Standley DM, Toh H, Nakamura H.
    Proteins; 2008 Sep; 72(4):1333-51. PubMed ID: 18384072
    [Abstract] [Full Text] [Related]

  • 2. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
    Wilson CA, Kreychman J, Gerstein M.
    J Mol Biol; 2000 Mar 17; 297(1):233-49. PubMed ID: 10704319
    [Abstract] [Full Text] [Related]

  • 3. Estimating quality of template-based protein models by alignment stability.
    Chen H, Kihara D.
    Proteins; 2008 May 15; 71(3):1255-74. PubMed ID: 18041762
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  • 4. Fast model-based protein homology detection without alignment.
    Hochreiter S, Heusel M, Obermayer K.
    Bioinformatics; 2007 Jul 15; 23(14):1728-36. PubMed ID: 17488755
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  • 5. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
    Tångrot JE, Kågström B, Sauer UH.
    Proteins; 2009 Aug 01; 76(2):343-52. PubMed ID: 19173309
    [Abstract] [Full Text] [Related]

  • 6. SUPFAM: a database of sequence superfamilies of protein domains.
    Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, Srinivasan N.
    BMC Bioinformatics; 2004 Mar 15; 5():28. PubMed ID: 15113407
    [Abstract] [Full Text] [Related]

  • 7. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH, Huang H, Kihara D.
    Proteins; 2006 Aug 15; 64(3):587-600. PubMed ID: 16799934
    [Abstract] [Full Text] [Related]

  • 8. Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.
    Canaves JM.
    Proteins; 2004 Jul 01; 56(1):19-27. PubMed ID: 15162483
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  • 12. Scoring function for automated assessment of protein structure template quality.
    Zhang Y, Skolnick J.
    Proteins; 2004 Dec 01; 57(4):702-10. PubMed ID: 15476259
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  • 13. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
    Skolnick J, Kihara D, Zhang Y.
    Proteins; 2004 Aug 15; 56(3):502-18. PubMed ID: 15229883
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  • 14. Website review: interPro (the integrated resource of protein domains and functional sites).
    Southan C.
    Yeast; 2000 Dec 15; 17(4):327-34. PubMed ID: 11119311
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  • 16. The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis.
    Bartoli L, Montanucci L, Fronza R, Martelli PL, Fariselli P, Carota L, Donvito G, Maggi GP, Casadio R.
    J Proteome Res; 2009 Sep 15; 8(9):4362-71. PubMed ID: 19552451
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  • 17. Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.
    Bandyopadhyay D, Huan J, Liu J, Prins J, Snoeyink J, Wang W, Tropsha A.
    IEEE Trans Inf Technol Biomed; 2010 Sep 15; 14(5):1137-43. PubMed ID: 20570776
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