These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

334 related items for PubMed ID: 18418822

  • 1. (Thermo)dynamic role of receptor flexibility, entropy, and motional correlation in protein-ligand binding.
    Baron R, McCammon JA.
    Chemphyschem; 2008 May 16; 9(7):983-8. PubMed ID: 18418822
    [Abstract] [Full Text] [Related]

  • 2. Dynamics, hydration, and motional averaging of a loop-gated artificial protein cavity: the W191G mutant of cytochrome c peroxidase in water as revealed by molecular dynamics simulations.
    Baron R, McCammon JA.
    Biochemistry; 2007 Sep 18; 46(37):10629-42. PubMed ID: 17718514
    [Abstract] [Full Text] [Related]

  • 3. Calculations of solute and solvent entropies from molecular dynamics simulations.
    Carlsson J, Aqvist J.
    Phys Chem Chem Phys; 2006 Dec 14; 8(46):5385-95. PubMed ID: 17119645
    [Abstract] [Full Text] [Related]

  • 4. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L, Liang S, Pilcher MM, Meroueh SO.
    Protein Eng Des Sel; 2009 Sep 14; 22(9):575-86. PubMed ID: 19643976
    [Abstract] [Full Text] [Related]

  • 5. A computational investigation of allostery in the catabolite activator protein.
    Li L, Uversky VN, Dunker AK, Meroueh SO.
    J Am Chem Soc; 2007 Dec 19; 129(50):15668-76. PubMed ID: 18041838
    [Abstract] [Full Text] [Related]

  • 6. Cancer-related mutations in BRCA1-BRCT cause long-range structural changes in protein-protein binding sites: a molecular dynamics study.
    Gough CA, Gojobori T, Imanishi T.
    Proteins; 2007 Jan 01; 66(1):69-86. PubMed ID: 17063491
    [Abstract] [Full Text] [Related]

  • 7. Artificial protein cavities as specific ligand-binding templates: characterization of an engineered heterocyclic cation-binding site that preserves the evolved specificity of the parent protein.
    Musah RA, Jensen GM, Bunte SW, Rosenfeld RJ, Goodin DB.
    J Mol Biol; 2002 Jan 25; 315(4):845-57. PubMed ID: 11812152
    [Abstract] [Full Text] [Related]

  • 8. Cytochrome c/cytochrome c peroxidase complex: effect of binding-site mutations on the thermodynamics of complex formation.
    Erman JE, Kresheck GC, Vitello LB, Miller MA.
    Biochemistry; 1997 Apr 01; 36(13):4054-60. PubMed ID: 9092837
    [Abstract] [Full Text] [Related]

  • 9. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
    Eberini I, Guerini Rocco A, Ientile AR, Baptista AM, Gianazza E, Tomaselli S, Molinari H, Ragona L.
    Proteins; 2008 Jun 01; 71(4):1889-98. PubMed ID: 18175325
    [Abstract] [Full Text] [Related]

  • 10. Probing the dynamic nature of water molecules and their influences on ligand binding in a model binding site.
    Cappel D, Wahlström R, Brenk R, Sotriffer CA.
    J Chem Inf Model; 2011 Oct 24; 51(10):2581-94. PubMed ID: 21916516
    [Abstract] [Full Text] [Related]

  • 11. Calculation of absolute protein-ligand binding constants with the molecular dynamics free energy perturbation method.
    Woo HJ.
    Methods Mol Biol; 2008 Oct 24; 443():109-20. PubMed ID: 18446284
    [Abstract] [Full Text] [Related]

  • 12. Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex.
    Zoete V, Michielin O.
    Proteins; 2007 Jun 01; 67(4):1026-47. PubMed ID: 17377991
    [Abstract] [Full Text] [Related]

  • 13. Modeling protein-small molecule interactions: structure and thermodynamics of noble gases binding in a cavity in mutant phage T4 lysozyme L99A.
    Mann G, Hermans J.
    J Mol Biol; 2000 Sep 29; 302(4):979-89. PubMed ID: 10993736
    [Abstract] [Full Text] [Related]

  • 14. Increased protein backbone conformational entropy upon hydrophobic ligand binding.
    Zídek L, Novotny MV, Stone MJ.
    Nat Struct Biol; 1999 Dec 29; 6(12):1118-21. PubMed ID: 10581552
    [Abstract] [Full Text] [Related]

  • 15. Response of small-scale, methyl rotors to protein-ligand association: a simulation analysis of calmodulin-peptide binding.
    Krishnan M, Smith JC.
    J Am Chem Soc; 2009 Jul 29; 131(29):10083-91. PubMed ID: 19621963
    [Abstract] [Full Text] [Related]

  • 16. Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods.
    Adekoya OA, Willassen NP, Sylte I.
    J Struct Biol; 2006 Feb 29; 153(2):129-44. PubMed ID: 16376106
    [Abstract] [Full Text] [Related]

  • 17. Backbone entropy of loops as a measure of their flexibility: application to a ras protein simulated by molecular dynamics.
    Meirovitch H, Hendrickson TF.
    Proteins; 1997 Oct 29; 29(2):127-40. PubMed ID: 9329078
    [Abstract] [Full Text] [Related]

  • 18. Flexibility and conformational entropy in protein-protein binding.
    Grünberg R, Nilges M, Leckner J.
    Structure; 2006 Apr 29; 14(4):683-93. PubMed ID: 16615910
    [Abstract] [Full Text] [Related]

  • 19. The effect of water displacement on binding thermodynamics: concanavalin A.
    Li Z, Lazaridis T.
    J Phys Chem B; 2005 Jan 13; 109(1):662-70. PubMed ID: 16851059
    [Abstract] [Full Text] [Related]

  • 20. Computational studies of tryptophanyl-tRNA synthetase: activation of ATP by induced-fit.
    Kapustina M, Carter CW.
    J Mol Biol; 2006 Oct 06; 362(5):1159-80. PubMed ID: 16949606
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 17.