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Journal Abstract Search

236 related items for PubMed ID: 18428695

  • 1. Viewing and editing assembled sequences using Consed.
    Gordon D.
    Curr Protoc Bioinformatics; 2003 Aug; Chapter 11():Unit11.2. PubMed ID: 18428695
    [Abstract] [Full Text] [Related]

  • 2. Assembling genomic DNA sequences with PHRAP.
    de la Bastide M, McCombie WR.
    Curr Protoc Bioinformatics; 2007 Mar; Chapter 11():Unit11.4. PubMed ID: 18428783
    [Abstract] [Full Text] [Related]

  • 3. ReDiT: Repeat Discrepancy Tagger--a shotgun assembly finishing aid.
    Tammi MT, Arner E, Kindlund E, Andersson B.
    Bioinformatics; 2004 Mar 22; 20(5):803-4. PubMed ID: 14751967
    [Abstract] [Full Text] [Related]

  • 4. PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing.
    Nickerson DA, Tobe VO, Taylor SL.
    Nucleic Acids Res; 1997 Jul 15; 25(14):2745-51. PubMed ID: 9207020
    [Abstract] [Full Text] [Related]

  • 5. Consed: a graphical tool for sequence finishing.
    Gordon D, Abajian C, Green P.
    Genome Res; 1998 Mar 15; 8(3):195-202. PubMed ID: 9521923
    [Abstract] [Full Text] [Related]

  • 6. Consed: a graphical editor for next-generation sequencing.
    Gordon D, Green P.
    Bioinformatics; 2013 Nov 15; 29(22):2936-7. PubMed ID: 23995391
    [Abstract] [Full Text] [Related]

  • 7. OSLay: optimal syntenic layout of unfinished assemblies.
    Richter DC, Schuster SC, Huson DH.
    Bioinformatics; 2007 Jul 01; 23(13):1573-9. PubMed ID: 17463020
    [Abstract] [Full Text] [Related]

  • 8. DNAVis: interactive visualization of comparative genome annotations.
    Fiers MW, van de Wetering H, Peeters TH, van Wijk JJ, Nap JP.
    Bioinformatics; 2006 Feb 01; 22(3):354-5. PubMed ID: 16332715
    [Abstract] [Full Text] [Related]

  • 9. SChiSM2: creating interactive web page annotations of molecular structure models using Jmol.
    Cammer S.
    Bioinformatics; 2007 Feb 01; 23(3):383-4. PubMed ID: 17204464
    [Abstract] [Full Text] [Related]

  • 10. Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.
    Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F.
    J Biotechnol; 2003 Dec 19; 106(2-3):121-33. PubMed ID: 14651855
    [Abstract] [Full Text] [Related]

  • 11. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
    Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.
    Bioinformatics; 2006 Feb 15; 22(4):497-9. PubMed ID: 16267081
    [Abstract] [Full Text] [Related]

  • 12. DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions.
    Arner E, Tammi MT, Tran AN, Kindlund E, Andersson B.
    BMC Bioinformatics; 2006 Mar 20; 7():155. PubMed ID: 16549006
    [Abstract] [Full Text] [Related]

  • 13. Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome.
    Rieder MJ, Taylor SL, Tobe VO, Nickerson DA.
    Nucleic Acids Res; 1998 Feb 15; 26(4):967-73. PubMed ID: 9461455
    [Abstract] [Full Text] [Related]

  • 14. PolyPhred analysis software for mutation detection from fluorescence-based sequence data.
    Montgomery KT, Iartchouck O, Li L, Loomis S, Obourn V, Kucherlapati R.
    Curr Protoc Hum Genet; 2008 Oct 15; Chapter 7():Unit 7.16. PubMed ID: 18972372
    [Abstract] [Full Text] [Related]

  • 15. MultiPipMaker: comparative alignment server for multiple DNA sequences.
    Elnitski L, Riemer C, Burhans R, Hardison R, Miller W.
    Curr Protoc Bioinformatics; 2005 Apr 15; Chapter 10():Unit10.4. PubMed ID: 18428743
    [Abstract] [Full Text] [Related]

  • 16. GATA: a graphic alignment tool for comparative sequence analysis.
    Nix DA, Eisen MB.
    BMC Bioinformatics; 2005 Jan 17; 6():9. PubMed ID: 15655071
    [Abstract] [Full Text] [Related]

  • 17. SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides.
    Ho JW, Adams CE, Lew JB, Matthews TJ, Ng CC, Shahabi-Sirjani A, Tan LH, Zhao Y, Easteal S, Wilson SR, Jermiin LS.
    Bioinformatics; 2006 Sep 01; 22(17):2162-3. PubMed ID: 16766557
    [Abstract] [Full Text] [Related]

  • 18. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
    Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.
    Bioinformatics; 2007 Jul 01; 23(13):i387-91. PubMed ID: 17646321
    [Abstract] [Full Text] [Related]

  • 19. Large scale sequencing.
    Stein L.
    Curr Protoc Bioinformatics; 2003 Aug 01; Chapter 11():Unit11.1. PubMed ID: 18428694
    [Abstract] [Full Text] [Related]

  • 20. TRAP: automated classification, quantification and annotation of tandemly repeated sequences.
    Sobreira TJ, Durham AM, Gruber A.
    Bioinformatics; 2006 Feb 01; 22(3):361-2. PubMed ID: 16332714
    [Abstract] [Full Text] [Related]

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