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Journal Abstract Search

314 related items for PubMed ID: 18428783

  • 1. Assembling genomic DNA sequences with PHRAP.
    de la Bastide M, McCombie WR.
    Curr Protoc Bioinformatics; 2007 Mar; Chapter 11():Unit11.4. PubMed ID: 18428783
    [Abstract] [Full Text] [Related]

  • 2. Viewing and editing assembled sequences using Consed.
    Gordon D.
    Curr Protoc Bioinformatics; 2003 Aug; Chapter 11():Unit11.2. PubMed ID: 18428695
    [Abstract] [Full Text] [Related]

  • 3. ACT: the Artemis Comparison Tool.
    Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J.
    Bioinformatics; 2005 Aug 15; 21(16):3422-3. PubMed ID: 15976072
    [Abstract] [Full Text] [Related]

  • 4. CAP3: A DNA sequence assembly program.
    Huang X, Madan A.
    Genome Res; 1999 Sep 15; 9(9):868-77. PubMed ID: 10508846
    [Abstract] [Full Text] [Related]

  • 5. ReDiT: Repeat Discrepancy Tagger--a shotgun assembly finishing aid.
    Tammi MT, Arner E, Kindlund E, Andersson B.
    Bioinformatics; 2004 Mar 22; 20(5):803-4. PubMed ID: 14751967
    [Abstract] [Full Text] [Related]

  • 6. MultiPipMaker: comparative alignment server for multiple DNA sequences.
    Elnitski L, Riemer C, Burhans R, Hardison R, Miller W.
    Curr Protoc Bioinformatics; 2005 Apr 22; Chapter 10():Unit10.4. PubMed ID: 18428743
    [Abstract] [Full Text] [Related]

  • 7. Minimus: a fast, lightweight genome assembler.
    Sommer DD, Delcher AL, Salzberg SL, Pop M.
    BMC Bioinformatics; 2007 Feb 26; 8():64. PubMed ID: 17324286
    [Abstract] [Full Text] [Related]

  • 8. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
    Mrázek J, Xie S.
    Bioinformatics; 2006 Dec 15; 22(24):3099-100. PubMed ID: 17095514
    [Abstract] [Full Text] [Related]

  • 9. Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences.
    van Baren MJ, Koebbe BC, Brent MR.
    Curr Protoc Bioinformatics; 2007 Dec 15; Chapter 4():4.8.1-4.8.16. PubMed ID: 18428682
    [Abstract] [Full Text] [Related]

  • 10. Using RepeatMasker to identify repetitive elements in genomic sequences.
    Chen N.
    Curr Protoc Bioinformatics; 2004 May 15; Chapter 4():Unit 4.10. PubMed ID: 18428725
    [Abstract] [Full Text] [Related]

  • 11. Ridom TraceEdit: a DNA trace editor and viewer.
    Rothgänger J, Weniger M, Weniger T, Mellmann A, Harmsen D.
    Bioinformatics; 2006 Feb 15; 22(4):493-4. PubMed ID: 16357036
    [Abstract] [Full Text] [Related]

  • 12. GraphDNA: a Java program for graphical display of DNA composition analyses.
    Thomas JM, Horspool D, Brown G, Tcherepanov V, Upton C.
    BMC Bioinformatics; 2007 Jan 23; 8():21. PubMed ID: 17244370
    [Abstract] [Full Text] [Related]

  • 13. Using geneid to identify genes.
    Blanco E, Parra G, Guigó R.
    Curr Protoc Bioinformatics; 2007 Jun 23; Chapter 4():Unit 4.3. PubMed ID: 18428791
    [Abstract] [Full Text] [Related]

  • 14. Installing and configuring CMap.
    Faga B.
    Curr Protoc Bioinformatics; 2007 Mar 23; Chapter 9():Unit 9.8. PubMed ID: 18428796
    [Abstract] [Full Text] [Related]

  • 15. BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
    Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC.
    Bioinformatics; 2005 Apr 01; 21(7):853-9. PubMed ID: 15514001
    [Abstract] [Full Text] [Related]

  • 16. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
    Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.
    Bioinformatics; 2006 Feb 15; 22(4):497-9. PubMed ID: 16267081
    [Abstract] [Full Text] [Related]

  • 17. WindowMasker: window-based masker for sequenced genomes.
    Morgulis A, Gertz EM, Schäffer AA, Agarwala R.
    Bioinformatics; 2006 Jan 15; 22(2):134-41. PubMed ID: 16287941
    [Abstract] [Full Text] [Related]

  • 18. SMASHing regulatory sites in DNA by human-mouse sequence comparisons.
    Zavolan M, Socci ND, Rajewsky N, Gaasterlamd T.
    Proc IEEE Comput Soc Bioinform Conf; 2003 Jan 15; 2():277-86. PubMed ID: 16452803
    [Abstract] [Full Text] [Related]

  • 19. Large scale sequencing.
    Stein L.
    Curr Protoc Bioinformatics; 2003 Aug 15; Chapter 11():Unit11.1. PubMed ID: 18428694
    [Abstract] [Full Text] [Related]

  • 20. Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.
    Lee WH, Vega VB.
    Bioinformatics; 2004 Nov 01; 20(16):2863-4. PubMed ID: 15130927
    [Abstract] [Full Text] [Related]

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