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Journal Abstract Search

305 related items for PubMed ID: 18474114

  • 21. PPIDD: an extraction and visualisation method of biological protein-protein interfaces.
    Benoit V, Mucchielli-Giorgi MH, Dumont B, Durosay P, Reymond N, Delacroix H.
    Biochimie; 2008 Apr; 90(4):640-7. PubMed ID: 18086573
    [Abstract] [Full Text] [Related]

  • 22. DOCKGROUND resource for studying protein-protein interfaces.
    Douguet D, Chen HC, Tovchigrechko A, Vakser IA.
    Bioinformatics; 2006 Nov 01; 22(21):2612-8. PubMed ID: 16928732
    [Abstract] [Full Text] [Related]

  • 23. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep 01; 83(9):1563-70. PubMed ID: 25488330
    [Abstract] [Full Text] [Related]

  • 24. A quantitative analysis of interfacial amino acid conservation in protein-protein hetero complexes.
    Reddy BV, Kaznessis YN.
    J Bioinform Comput Biol; 2005 Oct 01; 3(5):1137-50. PubMed ID: 16278951
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  • 25. Protein-protein interaction hotspots carved into sequences.
    Ofran Y, Rost B.
    PLoS Comput Biol; 2007 Jul 01; 3(7):e119. PubMed ID: 17630824
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  • 26. How proteins get in touch: interface prediction in the study of biomolecular complexes.
    de Vries SJ, Bonvin AM.
    Curr Protein Pept Sci; 2008 Aug 01; 9(4):394-406. PubMed ID: 18691126
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  • 27. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J, Olechnovič K, Venclovas Č.
    Proteins; 2019 Dec 01; 87(12):1222-1232. PubMed ID: 31294859
    [Abstract] [Full Text] [Related]

  • 28. Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement.
    Tuncbag N, Keskin O, Nussinov R, Gursoy A.
    Proteins; 2012 Apr 01; 80(4):1239-49. PubMed ID: 22275112
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  • 29. Using convex hulls to extract interaction interfaces from known structures.
    Dafas P, Bolser D, Gomoluch J, Park J, Schroeder M.
    Bioinformatics; 2004 Jul 10; 20(10):1486-90. PubMed ID: 15231539
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  • 30. Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.
    Ponomarenko JV, Bourne PE, Shindyalov IN.
    Proteins; 2005 Mar 01; 58(4):855-65. PubMed ID: 15645518
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  • 31. Optimal clustering for detecting near-native conformations in protein docking.
    Kozakov D, Clodfelter KH, Vajda S, Camacho CJ.
    Biophys J; 2005 Aug 01; 89(2):867-75. PubMed ID: 15908573
    [Abstract] [Full Text] [Related]

  • 32. Docking by structural similarity at protein-protein interfaces.
    Sinha R, Kundrotas PJ, Vakser IA.
    Proteins; 2010 Nov 15; 78(15):3235-41. PubMed ID: 20715056
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  • 33. Deciphering Supramolecular Structures with Protein-Protein Interaction Network Modeling.
    Tsuji T, Yoda T, Shirai T.
    Sci Rep; 2015 Nov 09; 5():16341. PubMed ID: 26549015
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  • 34. PRISM: protein-protein interaction prediction by structural matching.
    Keskin O, Nussinov R, Gursoy A.
    Methods Mol Biol; 2008 Nov 09; 484():505-21. PubMed ID: 18592198
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  • 35. An evolutionary and structural characterization of mammalian protein complex organization.
    Wong P, Althammer S, Hildebrand A, Kirschner A, Pagel P, Geissler B, Smialowski P, Blöchl F, Oesterheld M, Schmidt T, Strack N, Theis FJ, Ruepp A, Frishman D.
    BMC Genomics; 2008 Dec 23; 9():629. PubMed ID: 19108706
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  • 36. Revisiting the Voronoi description of protein-protein interfaces.
    Cazals F, Proust F, Bahadur RP, Janin J.
    Protein Sci; 2006 Sep 23; 15(9):2082-92. PubMed ID: 16943442
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  • 37. Blind predictions of protein interfaces by docking calculations in CAPRI.
    Lensink MF, Wodak SJ.
    Proteins; 2010 Nov 15; 78(15):3085-95. PubMed ID: 20839234
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  • 38. Structural and functional analysis of multi-interface domains.
    Zhao L, Hoi SC, Wong L, Hamp T, Li J.
    PLoS One; 2012 Nov 15; 7(12):e50821. PubMed ID: 23272073
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  • 39. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J, Abagyan R, Totrov M.
    Proteins; 2005 Aug 01; 60(2):308-13. PubMed ID: 15981266
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  • 40. Biological units and their effect upon the properties and prediction of protein-protein interactions.
    Jefferson ER, Walsh TP, Barton GJ.
    J Mol Biol; 2006 Dec 15; 364(5):1118-29. PubMed ID: 17049359
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