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532 related items for PubMed ID: 18478584

  • 1. Comparative molecular dynamics and Monte Carlo study of statistical properties for coarse-grained heteropolymers.
    Schluttig J, Bachmann M, Janke W.
    J Comput Chem; 2008 Nov 30; 29(15):2603-12. PubMed ID: 18478584
    [Abstract] [Full Text] [Related]

  • 2. Identification of characteristic protein folding channels in a coarse-grained hydrophobic-polar peptide model.
    Schnabel S, Bachmann M, Janke W.
    J Chem Phys; 2007 Mar 14; 126(10):105102. PubMed ID: 17362088
    [Abstract] [Full Text] [Related]

  • 3. Thermodynamics and kinetics of a Gō proteinlike heteropolymer model with two-state folding characteristics.
    Kallias A, Bachmann M, Janke W.
    J Chem Phys; 2008 Feb 07; 128(5):055102. PubMed ID: 18266462
    [Abstract] [Full Text] [Related]

  • 4. Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations.
    Ulmschneider JP, Ulmschneider MB, Di Nola A.
    J Phys Chem B; 2006 Aug 24; 110(33):16733-42. PubMed ID: 16913813
    [Abstract] [Full Text] [Related]

  • 5. Non-arrhenius behavior in the unfolding of a short, hydrophobic alpha-helix. Complementarity of molecular dynamics and lattice model simulations.
    Collet O, Chipot C.
    J Am Chem Soc; 2003 May 28; 125(21):6573-80. PubMed ID: 12785798
    [Abstract] [Full Text] [Related]

  • 6. Molecular simulation of polymer assisted protein refolding.
    Lu D, Liu Z.
    J Chem Phys; 2005 Oct 01; 123(13):134903. PubMed ID: 16223327
    [Abstract] [Full Text] [Related]

  • 7. Thermodynamical properties of simple models of protein-like heteropolymers.
    Sikorski A, Romiszowski P.
    Biopolymers; 2003 Jul 01; 69(3):391-8. PubMed ID: 12833265
    [Abstract] [Full Text] [Related]

  • 8. Monte carlo simulations of protein-like heteropolymers.
    Sikorski A, Romiszowski P.
    Acta Biochim Pol; 2001 Jul 01; 48(1):77-81. PubMed ID: 11440185
    [Abstract] [Full Text] [Related]

  • 9. A coarse-grained model and associated lattice Monte Carlo simulation of the coil-helix transition of a homopolypeptide.
    Chen Y, Zhang Q, Ding J.
    J Chem Phys; 2004 Feb 15; 120(7):3467-74. PubMed ID: 15268504
    [Abstract] [Full Text] [Related]

  • 10. Structure and thermodynamics of protein-polymer solutions: effects of spatially distributed hydrophobic surface residues.
    Jönsson M, Linse P.
    J Phys Chem B; 2005 Aug 11; 109(31):15107-17. PubMed ID: 16852912
    [Abstract] [Full Text] [Related]

  • 11. Dependence of folding dynamics and structural stability on the location of a hydrophobic pair in beta-hairpins.
    Imamura H, Chen JZ.
    Proteins; 2006 May 15; 63(3):555-70. PubMed ID: 16485280
    [Abstract] [Full Text] [Related]

  • 12. Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo.
    Zhang J, Kou SC, Liu JS.
    J Chem Phys; 2007 Jun 14; 126(22):225101. PubMed ID: 17581081
    [Abstract] [Full Text] [Related]

  • 13. Optimized Wang-Landau sampling of lattice polymers: ground state search and folding thermodynamics of HP model proteins.
    Wüst T, Landau DP.
    J Chem Phys; 2012 Aug 14; 137(6):064903. PubMed ID: 22897307
    [Abstract] [Full Text] [Related]

  • 14. Density guided importance sampling: application to a reduced model of protein folding.
    Thomas GL, Sessions RB, Parker MJ.
    Bioinformatics; 2005 Jun 15; 21(12):2839-43. PubMed ID: 15802285
    [Abstract] [Full Text] [Related]

  • 15. Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics.
    De Mori GM, Colombo G, Micheletti C.
    Proteins; 2005 Feb 01; 58(2):459-71. PubMed ID: 15521059
    [Abstract] [Full Text] [Related]

  • 16. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
    Rossinsky E, Srebnik S.
    Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169
    [Abstract] [Full Text] [Related]

  • 17. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
    Betancourt MR.
    J Phys Chem B; 2009 Nov 05; 113(44):14824-30. PubMed ID: 19817469
    [Abstract] [Full Text] [Related]

  • 18. A minimal proteinlike lattice model: an alpha-helix motif.
    Pokarowski P, Droste K, Kolinski A.
    J Chem Phys; 2005 Jun 01; 122(21):214915. PubMed ID: 15974798
    [Abstract] [Full Text] [Related]

  • 19. A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition.
    Kolinski A, Gront D, Pokarowski P, Skolnick J.
    Biopolymers; 2003 Jul 01; 69(3):399-405. PubMed ID: 12833266
    [Abstract] [Full Text] [Related]

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