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Journal Abstract Search

575 related items for PubMed ID: 18592192

  • 1. Database similarity searches.
    Plewniak F.
    Methods Mol Biol; 2008; 484():361-78. PubMed ID: 18592192
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  • 5. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 6. SIMAP--the similarity matrix of proteins.
    Arnold R, Rattei T, Tischler P, Truong MD, Stümpflen V, Mewes W.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii42-6. PubMed ID: 16204123
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  • 7. A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.
    Othman RM, Deris S, Illias RM.
    J Biomed Inform; 2008 Feb 01; 41(1):65-81. PubMed ID: 17681495
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  • 8. A sequence property approach to searching protein databases.
    Hobohm U, Sander C.
    J Mol Biol; 1995 Aug 18; 251(3):390-9. PubMed ID: 7650738
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  • 9. Sequence database searches via de novo peptide sequencing by tandem mass spectrometry.
    Taylor JA, Johnson RS.
    Rapid Commun Mass Spectrom; 1997 Aug 18; 11(9):1067-75. PubMed ID: 9204580
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  • 10. An adaptive and iterative algorithm for refining multiple sequence alignment.
    Wang Y, Li KB.
    Comput Biol Chem; 2004 Apr 18; 28(2):141-8. PubMed ID: 15130542
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  • 11. BLAST and FASTA similarity searching for multiple sequence alignment.
    Pearson WR.
    Methods Mol Biol; 2014 Apr 18; 1079():75-101. PubMed ID: 24170396
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  • 12. Filtering redundancies for sequence similarity search programs.
    Cantalloube H, Chomilier J, Chiusa S, Lonquety M, Spadoni JL, Zagury JF.
    J Biomol Struct Dyn; 2005 Feb 18; 22(4):487-92. PubMed ID: 15588112
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  • 13. Benchmarking PSI-BLAST in genome annotation.
    Müller A, MacCallum RM, Sternberg MJ.
    J Mol Biol; 1999 Nov 12; 293(5):1257-71. PubMed ID: 10547299
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  • 14. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
    Stevens FJ.
    J Mol Recognit; 2005 Nov 12; 18(2):139-49. PubMed ID: 15558595
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  • 15. Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.
    Boekhorst J, Snel B.
    BMC Bioinformatics; 2007 Sep 21; 8():356. PubMed ID: 17888146
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  • 16. Comparison of sequence and structure alignments for protein domains.
    Marchler-Bauer A, Panchenko AR, Ariel N, Bryant SH.
    Proteins; 2002 Aug 15; 48(3):439-46. PubMed ID: 12112669
    [Abstract] [Full Text] [Related]

  • 17. Identification of putative domain linkers by a neural network - application to a large sequence database.
    Miyazaki S, Kuroda Y, Yokoyama S.
    BMC Bioinformatics; 2006 Jun 27; 7():323. PubMed ID: 16800897
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  • 18. Identifying remote protein homologs by network propagation.
    Noble WS, Kuang R, Leslie C, Weston J.
    FEBS J; 2005 Oct 27; 272(20):5119-28. PubMed ID: 16218946
    [Abstract] [Full Text] [Related]

  • 19. Peptide sequence tags for fast database search in mass-spectrometry.
    Frank A, Tanner S, Bafna V, Pevzner P.
    J Proteome Res; 2005 Oct 27; 4(4):1287-95. PubMed ID: 16083278
    [Abstract] [Full Text] [Related]

  • 20. The global trace graph, a novel paradigm for searching protein sequence databases.
    Heger A, Mallick S, Wilton C, Holm L.
    Bioinformatics; 2007 Sep 15; 23(18):2361-7. PubMed ID: 17823134
    [Abstract] [Full Text] [Related]

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