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895 related items for PubMed ID: 18593146

  • 1. Beta-hairpin folding by a model amyloid peptide in solution and at an interface.
    Knecht V.
    J Phys Chem B; 2008 Aug 07; 112(31):9476-83. PubMed ID: 18593146
    [Abstract] [Full Text] [Related]

  • 2. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR, Maynard AJ, Searle MS.
    J Mol Biol; 1999 Oct 08; 292(5):1051-69. PubMed ID: 10512702
    [Abstract] [Full Text] [Related]

  • 3. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B, Nussinov R.
    J Mol Biol; 2000 Mar 03; 296(4):1091-104. PubMed ID: 10686106
    [Abstract] [Full Text] [Related]

  • 4. beta-hairpin folding and stability: molecular dynamics simulations of designed peptides in aqueous solution.
    Santiveri CM, Jiménez MA, Rico M, Van Gunsteren WF, Daura X.
    J Pept Sci; 2004 Sep 03; 10(9):546-65. PubMed ID: 15473263
    [Abstract] [Full Text] [Related]

  • 5. Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide.
    Baumketner A, Shea JE.
    J Mol Biol; 2006 Sep 22; 362(3):567-79. PubMed ID: 16930617
    [Abstract] [Full Text] [Related]

  • 6. Beta-hairpin conformation of fibrillogenic peptides: structure and alpha-beta transition mechanism revealed by molecular dynamics simulations.
    Daidone I, Simona F, Roccatano D, Broglia RA, Tiana G, Colombo G, Di Nola A.
    Proteins; 2004 Oct 01; 57(1):198-204. PubMed ID: 15326604
    [Abstract] [Full Text] [Related]

  • 7. Effects of turn residues on beta-hairpin folding--a molecular dynamics study.
    Wang H, Sung SS.
    Biopolymers; 1999 Dec 01; 50(7):763-76. PubMed ID: 10547531
    [Abstract] [Full Text] [Related]

  • 8. A cylinder-shaped double ribbon structure formed by an amyloid hairpin peptide derived from the beta-sheet of murine PrP: an X-ray and molecular dynamics simulation study.
    Croixmarie V, Briki F, David G, Coïc YM, Ovtracht L, Doucet J, Jamin N, Sanson A.
    J Struct Biol; 2005 Jun 01; 150(3):284-99. PubMed ID: 15890277
    [Abstract] [Full Text] [Related]

  • 9. Modeling the alpha-helix to beta-hairpin transition mechanism and the formation of oligomeric aggregates of the fibrillogenic peptide Abeta(12-28): insights from all-atom molecular dynamics simulations.
    Simona F, Tiana G, Broglia RA, Colombo G.
    J Mol Graph Model; 2004 Dec 01; 23(3):263-73. PubMed ID: 15530822
    [Abstract] [Full Text] [Related]

  • 10. Influence of the solvent on the self-assembly of a modified amyloid beta peptide fragment. II. NMR and computer simulation investigation.
    Hamley IW, Nutt DR, Brown GD, Miravet JF, Escuder B, Rodríguez-Llansola F.
    J Phys Chem B; 2010 Jan 21; 114(2):940-51. PubMed ID: 20039666
    [Abstract] [Full Text] [Related]

  • 11. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S, Sasidhar YU.
    J Pept Sci; 2007 Oct 21; 13(10):679-92. PubMed ID: 17787022
    [Abstract] [Full Text] [Related]

  • 12. Solution conformation and amyloid-like fibril formation of a polar peptide derived from a beta-hairpin in the OspA single-layer beta-sheet.
    Ohnishi S, Koide A, Koide S.
    J Mol Biol; 2000 Aug 11; 301(2):477-89. PubMed ID: 10926522
    [Abstract] [Full Text] [Related]

  • 13. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 14. Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.
    Daidone I, Amadei A, Di Nola A.
    Proteins; 2005 May 15; 59(3):510-8. PubMed ID: 15789436
    [Abstract] [Full Text] [Related]

  • 15. Common folding mechanism of a beta-hairpin peptide via non-native turn formation revealed by unbiased molecular dynamics simulations.
    Thukral L, Smith JC, Daidone I.
    J Am Chem Soc; 2009 Dec 23; 131(50):18147-52. PubMed ID: 19919102
    [Abstract] [Full Text] [Related]

  • 16. Effects of the Arctic (E22-->G) mutation on amyloid beta-protein folding: discrete molecular dynamics study.
    Lam AR, Teplow DB, Stanley HE, Urbanc B.
    J Am Chem Soc; 2008 Dec 24; 130(51):17413-22. PubMed ID: 19053400
    [Abstract] [Full Text] [Related]

  • 17. The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.
    Baumketner A, Shea JE.
    J Mol Biol; 2007 Feb 09; 366(1):275-85. PubMed ID: 17166516
    [Abstract] [Full Text] [Related]

  • 18. A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: a single beta-sheet model with a small hydrophobic core.
    Haspel N, Zanuy D, Ma B, Wolfson H, Nussinov R.
    J Mol Biol; 2005 Feb 04; 345(5):1213-27. PubMed ID: 15644216
    [Abstract] [Full Text] [Related]

  • 19. Folding dynamics of 10-residue beta-hairpin peptide chignolin.
    Suenaga A, Narumi T, Futatsugi N, Yanai R, Ohno Y, Okimoto N, Taiji M.
    Chem Asian J; 2007 May 04; 2(5):591-8. PubMed ID: 17465405
    [Abstract] [Full Text] [Related]

  • 20. Molecular dynamics simulations and free energy analyses on the dimer formation of an amyloidogenic heptapeptide from human beta2-microglobulin: implication for the protofibril structure.
    Lei H, Wu C, Wang Z, Duan Y.
    J Mol Biol; 2006 Mar 03; 356(4):1049-63. PubMed ID: 16403526
    [Abstract] [Full Text] [Related]

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