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Journal Abstract Search

411 related items for PubMed ID: 18599072

  • 1. Statistical analysis of interface similarity in crystals of homologous proteins.
    Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL.
    J Mol Biol; 2008 Aug 29; 381(2):487-507. PubMed ID: 18599072
    [Abstract] [Full Text] [Related]

  • 2. A PDB-wide, evolution-based assessment of protein-protein interfaces.
    Baskaran K, Duarte JM, Biyani N, Bliven S, Capitani G.
    BMC Struct Biol; 2014 Oct 18; 14():22. PubMed ID: 25326082
    [Abstract] [Full Text] [Related]

  • 3. The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms.
    Xu Q, Dunbrack RL.
    Nucleic Acids Res; 2011 Jan 18; 39(Database issue):D761-70. PubMed ID: 21036862
    [Abstract] [Full Text] [Related]

  • 4. Automated evaluation of quaternary structures from protein crystals.
    Bliven S, Lafita A, Parker A, Capitani G, Duarte JM.
    PLoS Comput Biol; 2018 Apr 18; 14(4):e1006104. PubMed ID: 29708963
    [Abstract] [Full Text] [Related]

  • 5. PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry.
    Dey S, Levy ED.
    Structure; 2021 Nov 04; 29(11):1303-1311.e3. PubMed ID: 34520740
    [Abstract] [Full Text] [Related]

  • 6. Investigation of protein quaternary structure via stoichiometry and symmetry information.
    Korkmaz S, Duarte JM, Prlić A, Goksuluk D, Zararsiz G, Saracbasi O, Burley SK, Rose PW.
    PLoS One; 2018 Nov 04; 13(6):e0197176. PubMed ID: 29864163
    [Abstract] [Full Text] [Related]

  • 7. Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts.
    Liu Q, Li Z, Li J.
    BMC Bioinformatics; 2014 Nov 04; 15 Suppl 16(Suppl 16):S3. PubMed ID: 25522196
    [Abstract] [Full Text] [Related]

  • 8. PDB-wide identification of biological assemblies from conserved quaternary structure geometry.
    Dey S, Ritchie DW, Levy ED.
    Nat Methods; 2018 Jan 04; 15(1):67-72. PubMed ID: 29155427
    [Abstract] [Full Text] [Related]

  • 9. Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
    Bordner AJ, Gorin AA.
    BMC Bioinformatics; 2008 May 12; 9():234. PubMed ID: 18474114
    [Abstract] [Full Text] [Related]

  • 10. Oligomeric protein structure networks: insights into protein-protein interactions.
    Brinda KV, Vishveshwara S.
    BMC Bioinformatics; 2005 Dec 10; 6():296. PubMed ID: 16336694
    [Abstract] [Full Text] [Related]

  • 11. Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts.
    Capitani G, Duarte JM, Baskaran K, Bliven S, Somody JC.
    Bioinformatics; 2016 Feb 15; 32(4):481-9. PubMed ID: 26508758
    [Abstract] [Full Text] [Related]

  • 12. Biological units and their effect upon the properties and prediction of protein-protein interactions.
    Jefferson ER, Walsh TP, Barton GJ.
    J Mol Biol; 2006 Dec 15; 364(5):1118-29. PubMed ID: 17049359
    [Abstract] [Full Text] [Related]

  • 13. Statistical analysis and prediction of protein-protein interfaces.
    Bordner AJ, Abagyan R.
    Proteins; 2005 Aug 15; 60(3):353-66. PubMed ID: 15906321
    [Abstract] [Full Text] [Related]

  • 14. Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected.
    Gao M, Skolnick J.
    Proc Natl Acad Sci U S A; 2010 Dec 28; 107(52):22517-22. PubMed ID: 21149688
    [Abstract] [Full Text] [Related]

  • 15. Protein-protein interaction at crystal contacts.
    Janin J, Rodier F.
    Proteins; 1995 Dec 28; 23(4):580-7. PubMed ID: 8749854
    [Abstract] [Full Text] [Related]

  • 16. The limit of accuracy of protein modeling: influence of crystal packing on protein structure.
    Eyal E, Gerzon S, Potapov V, Edelman M, Sobolev V.
    J Mol Biol; 2005 Aug 12; 351(2):431-42. PubMed ID: 16005885
    [Abstract] [Full Text] [Related]

  • 17. Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification.
    Elez K, Bonvin AMJJ, Vangone A.
    BMC Bioinformatics; 2018 Nov 30; 19(Suppl 15):438. PubMed ID: 30497368
    [Abstract] [Full Text] [Related]

  • 18. Homology-based hydrogen bond information improves crystallographic structures in the PDB.
    van Beusekom B, Touw WG, Tatineni M, Somani S, Rajagopal G, Luo J, Gilliland GL, Perrakis A, Joosten RP.
    Protein Sci; 2018 Mar 30; 27(3):798-808. PubMed ID: 29168245
    [Abstract] [Full Text] [Related]

  • 19. PreBI: prediction of biological interfaces of proteins in crystals.
    Tsuchiya Y, Kinoshita K, Ito N, Nakamura H.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W320-4. PubMed ID: 16844993
    [Abstract] [Full Text] [Related]

  • 20. Crystallographically correct but confusing presentation of structural models deposited in the Protein Data Bank.
    Dauter Z, Wlodawer A.
    Acta Crystallogr D Struct Biol; 2018 Sep 01; 74(Pt 9):939-945. PubMed ID: 30198902
    [Abstract] [Full Text] [Related]

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