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Journal Abstract Search

515 related items for PubMed ID: 18618711

  • 1. Computational protein design with side-chain conformational entropy.
    Sciretti D, Bruscolini P, Pelizzola A, Pretti M, Jaramillo A.
    Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
    [Abstract] [Full Text] [Related]

  • 2. Automatic protein design with all atom force-fields by exact and heuristic optimization.
    Wernisch L, Hery S, Wodak SJ.
    J Mol Biol; 2000 Aug 18; 301(3):713-36. PubMed ID: 10966779
    [Abstract] [Full Text] [Related]

  • 3. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
    Penel S, Doig AJ.
    J Mol Biol; 2001 Jan 26; 305(4):961-8. PubMed ID: 11162106
    [Abstract] [Full Text] [Related]

  • 4. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
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  • 5. Role of main-chain electrostatics, hydrophobic effect and side-chain conformational entropy in determining the secondary structure of proteins.
    Avbelj F, Fele L.
    J Mol Biol; 1998 Jun 12; 279(3):665-84. PubMed ID: 9641985
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  • 6. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
    Georgiev I, Lilien RH, Donald BR.
    Bioinformatics; 2006 Jul 15; 22(14):e174-83. PubMed ID: 16873469
    [Abstract] [Full Text] [Related]

  • 7. Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure.
    Kono H, Saven JG.
    J Mol Biol; 2001 Feb 23; 306(3):607-28. PubMed ID: 11178917
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  • 8. Entropy capacity determines protein folding.
    Galzitskaya OV, Garbuzynskiy SO.
    Proteins; 2006 Apr 01; 63(1):144-54. PubMed ID: 16400647
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  • 9. Estimates of the loss of main-chain conformational entropy of different residues on protein folding.
    Pal D, Chakrabarti P.
    Proteins; 1999 Aug 15; 36(3):332-9. PubMed ID: 10409826
    [Abstract] [Full Text] [Related]

  • 10. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.
    Lee KH, Xie D, Freire E, Amzel LM.
    Proteins; 1994 Sep 15; 20(1):68-84. PubMed ID: 7824524
    [Abstract] [Full Text] [Related]

  • 11. Computational protein design as a tool for fold recognition.
    am Busch MS, Mignon D, Simonson T.
    Proteins; 2009 Oct 15; 77(1):139-58. PubMed ID: 19408297
    [Abstract] [Full Text] [Related]

  • 12. Modeling side-chain conformation for homologous proteins using an energy-based rotamer search.
    Wilson C, Gregoret LM, Agard DA.
    J Mol Biol; 1993 Feb 20; 229(4):996-1006. PubMed ID: 8445659
    [Abstract] [Full Text] [Related]

  • 13. High accuracy template based modeling by global optimization.
    Joo K, Lee J, Lee S, Seo JH, Lee SJ, Lee J.
    Proteins; 2007 Feb 20; 69 Suppl 8():83-9. PubMed ID: 17894332
    [Abstract] [Full Text] [Related]

  • 14. Modeling the interplay between geometrical and energetic effects in protein folding.
    Suzuki Y, Onuchic JN.
    J Phys Chem B; 2005 Sep 01; 109(34):16503-10. PubMed ID: 16853098
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  • 15. Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain.
    Reichman C, Singh K, Liu Y, Singh S, Li H, Fajardo JE, Fiser A, Birge RB.
    Oncogene; 2005 Dec 08; 24(55):8187-99. PubMed ID: 16158059
    [Abstract] [Full Text] [Related]

  • 16. Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
    Gautier R, Tufféry P.
    J Comput Chem; 2003 Nov 30; 24(15):1950-61. PubMed ID: 14515377
    [Abstract] [Full Text] [Related]

  • 17. Computational protein design: software implementation, parameter optimization, and performance of a simple model.
    Schmidt Am Busch M, Lopes A, Mignon D, Simonson T.
    J Comput Chem; 2008 May 30; 29(7):1092-102. PubMed ID: 18069664
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  • 18. A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction.
    Sasaki TN, Cetin H, Sasai M.
    Biochem Biophys Res Commun; 2008 May 02; 369(2):500-6. PubMed ID: 18294960
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  • 19. A statistical rescoring scheme for protein-ligand docking: Consideration of entropic effect.
    Lee J, Seok C.
    Proteins; 2008 Feb 15; 70(3):1074-83. PubMed ID: 18076034
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  • 20. Accounting for conformational entropy in predicting binding free energies of protein-protein interactions.
    Kamisetty H, Ramanathan A, Bailey-Kellogg C, Langmead CJ.
    Proteins; 2011 Feb 15; 79(2):444-62. PubMed ID: 21120864
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