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Journal Abstract Search

475 related items for PubMed ID: 18662101

  • 1. Multiple sequence alignment based on profile alignment of intermediate sequences.
    Lu Y, Sze SH.
    J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
    [Abstract] [Full Text] [Related]

  • 2. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 3. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y, Schmidt B, Maskell DL.
    Bioinformatics; 2010 Aug 15; 26(16):1958-64. PubMed ID: 20576627
    [Abstract] [Full Text] [Related]

  • 4. A knowledge-based multiple-sequence alignment algorithm.
    Nguyen KD, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Aug 15; 10(4):884-96. PubMed ID: 24334383
    [Abstract] [Full Text] [Related]

  • 5. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
    [Abstract] [Full Text] [Related]

  • 6. A polynomial time solvable formulation of multiple sequence alignment.
    Sze SH, Lu Y, Yang Q.
    J Comput Biol; 2006 Mar 15; 13(2):309-19. PubMed ID: 16597242
    [Abstract] [Full Text] [Related]

  • 7. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K, Kuma K, Miyata T, Toh H.
    Genome Inform; 2005 Mar 15; 16(1):22-33. PubMed ID: 16362903
    [Abstract] [Full Text] [Related]

  • 8. PROMALS web server for accurate multiple protein sequence alignments.
    Pei J, Kim BH, Tang M, Grishin NV.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W649-52. PubMed ID: 17452345
    [Abstract] [Full Text] [Related]

  • 9. MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
    Pei J, Grishin NV.
    Nucleic Acids Res; 2006 Jul 15; 34(16):4364-74. PubMed ID: 16936316
    [Abstract] [Full Text] [Related]

  • 10. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
    Yamada S, Gotoh O, Yamana H.
    BMC Bioinformatics; 2006 Dec 01; 7():524. PubMed ID: 17137519
    [Abstract] [Full Text] [Related]

  • 11. HHsenser: exhaustive transitive profile search using HMM-HMM comparison.
    Söding J, Remmert M, Biegert A, Lupas AN.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W374-8. PubMed ID: 16845029
    [Abstract] [Full Text] [Related]

  • 12. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED, Bourne PE.
    BMC Bioinformatics; 2006 Sep 14; 7():410. PubMed ID: 16970830
    [Abstract] [Full Text] [Related]

  • 13. ProbCons: Probabilistic consistency-based multiple sequence alignment.
    Do CB, Mahabhashyam MS, Brudno M, Batzoglou S.
    Genome Res; 2005 Feb 14; 15(2):330-40. PubMed ID: 15687296
    [Abstract] [Full Text] [Related]

  • 14. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Edgar RC.
    Nucleic Acids Res; 2004 Feb 14; 32(5):1792-7. PubMed ID: 15034147
    [Abstract] [Full Text] [Related]

  • 15. GLProbs: Aligning Multiple Sequences Adaptively.
    Ye Y, Cheung DW, Wang Y, Yiu SM, Zhan Q, Lam TW, Ting HF.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Feb 14; 12(1):67-78. PubMed ID: 26357079
    [Abstract] [Full Text] [Related]

  • 16. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
    Wright ES.
    BMC Bioinformatics; 2015 Oct 06; 16():322. PubMed ID: 26445311
    [Abstract] [Full Text] [Related]

  • 17. SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction.
    Hagopian R, Davidson JR, Datta RS, Samad B, Jarvis GR, Sjölander K.
    Nucleic Acids Res; 2010 Jul 06; 38(Web Server issue):W29-34. PubMed ID: 20430824
    [Abstract] [Full Text] [Related]

  • 18. Scoring profile-to-profile sequence alignments.
    Wang G, Dunbrack RL.
    Protein Sci; 2004 Jun 06; 13(6):1612-26. PubMed ID: 15152092
    [Abstract] [Full Text] [Related]

  • 19. Alignment of protein sequences by their profiles.
    Marti-Renom MA, Madhusudhan MS, Sali A.
    Protein Sci; 2004 Apr 06; 13(4):1071-87. PubMed ID: 15044736
    [Abstract] [Full Text] [Related]

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