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Journal Abstract Search

357 related items for PubMed ID: 18680336

  • 21. Molecular dynamics of a vasopressin V2 receptor in a phospholipid bilayer membrane.
    Czaplewski C, Pasenkiewicz-Gierula M, Ciarkowski J.
    J Recept Signal Transduct Res; 1999; 19(1-4):355-67. PubMed ID: 10071770
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  • 22. Coupling molecular dynamics simulations with experiments for the rational design of indolicidin-analogous antimicrobial peptides.
    Tsai CW, Hsu NY, Wang CH, Lu CY, Chang Y, Tsai HH, Ruaan RC.
    J Mol Biol; 2009 Sep 25; 392(3):837-54. PubMed ID: 19576903
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  • 23. Membrane proteins: molecular dynamics simulations.
    Lindahl E, Sansom MS.
    Curr Opin Struct Biol; 2008 Aug 25; 18(4):425-31. PubMed ID: 18406600
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  • 24. Coarse-grained molecular dynamics study of cyclic peptide nanotube insertion into a lipid bilayer.
    Hwang H.
    J Phys Chem A; 2009 Apr 23; 113(16):4780-7. PubMed ID: 19035669
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  • 25. Homology modeling and molecular dynamics simulations of the alpha1 glycine receptor reveals different states of the channel.
    Cheng MH, Cascio M, Coalson RD.
    Proteins; 2007 Aug 01; 68(2):581-93. PubMed ID: 17469203
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  • 26. Agonist-induced conformational changes in thyrotropin-releasing hormone receptor type I: disulfide cross-linking and molecular modeling approaches.
    Huang W, Osman R, Gershengorn MC.
    Biochemistry; 2005 Feb 22; 44(7):2419-31. PubMed ID: 15709754
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  • 27. Sensitivity of hydrogen bond lifetime dynamics to the presence of ethanol at the interface of a phospholipid bilayer.
    Chanda J, Chakraborty S, Bandyopadhyay S.
    J Phys Chem B; 2006 Mar 02; 110(8):3791-7. PubMed ID: 16494438
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  • 28. Coarse-grained simulation: a high-throughput computational approach to membrane proteins.
    Sansom MS, Scott KA, Bond PJ.
    Biochem Soc Trans; 2008 Feb 02; 36(Pt 1):27-32. PubMed ID: 18208379
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  • 29. Structure and dynamics of water at the interface with phospholipid bilayers.
    Bhide SY, Berkowitz ML.
    J Chem Phys; 2005 Dec 08; 123(22):224702. PubMed ID: 16375490
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  • 30. Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations.
    Gorfe AA, Pellarin R, Caflisch A.
    J Am Chem Soc; 2004 Nov 24; 126(46):15277-86. PubMed ID: 15548025
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  • 31. GridMAT-MD: a grid-based membrane analysis tool for use with molecular dynamics.
    Allen WJ, Lemkul JA, Bevan DR.
    J Comput Chem; 2009 Sep 24; 30(12):1952-8. PubMed ID: 19090582
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  • 32. Model of an asymmetric DPPC/DPPS membrane: effect of asymmetry on the lipid properties. A molecular dynamics simulation study.
    López Cascales JJ, Otero TF, Smith BD, González C, Márquez M.
    J Phys Chem B; 2006 Feb 09; 110(5):2358-63. PubMed ID: 16471825
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  • 33. Lipids out of equilibrium: energetics of desorption and pore mediated flip-flop.
    Tieleman DP, Marrink SJ.
    J Am Chem Soc; 2006 Sep 27; 128(38):12462-7. PubMed ID: 16984196
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  • 34. Lipid/protein interactions and the membrane/water interfacial region.
    Domene C, Bond PJ, Deol SS, Sansom MS.
    J Am Chem Soc; 2003 Dec 10; 125(49):14966-7. PubMed ID: 14653713
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  • 35. Molecular recognition in purinergic receptors. 1. A comprehensive computational study of the h-P2Y1-receptor.
    Major DT, Fischer B.
    J Med Chem; 2004 Aug 26; 47(18):4391-404. PubMed ID: 15317452
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  • 36. Spontaneous formation of a barrel-stave pore in a coarse-grained model of the synthetic LS3 peptide and a DPPC lipid bilayer.
    Gkeka P, Sarkisov L.
    J Phys Chem B; 2009 Jan 08; 113(1):6-8. PubMed ID: 19072238
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  • 37. Thyroid hormone interactions with DMPC bilayers. A molecular dynamics study.
    Petruk AA, Marti MA, Alvarez RM.
    J Phys Chem B; 2009 Oct 08; 113(40):13357-64. PubMed ID: 19743839
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  • 38. Antagonist and agonist binding models of the human gonadotropin-releasing hormone receptor.
    Söderhäll JA, Polymeropoulos EE, Paulini K, Günther E, Kühne R.
    Biochem Biophys Res Commun; 2005 Jul 29; 333(2):568-82. PubMed ID: 15950933
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  • 39. Nonpolar interactions between trans-membrane helical EGF peptide and phosphatidylcholines, sphingomyelins and cholesterol. Molecular dynamics simulation studies.
    Róg T, Murzyn K, Karttunen M, Pasenkiewicz-Gierula M.
    J Pept Sci; 2008 Apr 29; 14(4):374-82. PubMed ID: 17985365
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  • 40. Antimicrobial peptides in action.
    Leontiadou H, Mark AE, Marrink SJ.
    J Am Chem Soc; 2006 Sep 20; 128(37):12156-61. PubMed ID: 16967965
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