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Journal Abstract Search

143 related items for PubMed ID: 18707533

  • 1. QNet: a tool for querying protein interaction networks.
    Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, Sharan R.
    J Comput Biol; 2008 Sep; 15(7):913-25. PubMed ID: 18707533
    [Abstract] [Full Text] [Related]

  • 2. Querying graphs in protein-protein interactions networks using feedback vertex set.
    Blin G, Sikora F, Vialette S.
    IEEE/ACM Trans Comput Biol Bioinform; 2010 Sep; 7(4):628-35. PubMed ID: 20498512
    [Abstract] [Full Text] [Related]

  • 3. Topology-free querying of protein interaction networks.
    Bruckner S, Hüffner F, Karp RM, Shamir R, Sharan R.
    J Comput Biol; 2010 Mar; 17(3):237-52. PubMed ID: 20377443
    [Abstract] [Full Text] [Related]

  • 4. Identification of conserved protein complexes based on a model of protein network evolution.
    Hirsh E, Sharan R.
    Bioinformatics; 2007 Jan 15; 23(2):e170-6. PubMed ID: 17237088
    [Abstract] [Full Text] [Related]

  • 5. RESQUE: network reduction using semi-Markov random walk scores for efficient querying of biological networks.
    Sahraeian SM, Yoon BJ.
    Bioinformatics; 2012 Aug 15; 28(16):2129-36. PubMed ID: 22730436
    [Abstract] [Full Text] [Related]

  • 6. Fitting a geometric graph to a protein-protein interaction network.
    Higham DJ, Rasajski M, Przulj N.
    Bioinformatics; 2008 Apr 15; 24(8):1093-9. PubMed ID: 18344248
    [Abstract] [Full Text] [Related]

  • 7. 2.5D visualisation of overlapping biological networks.
    Fung DC, Hong SH, Koschützki D, Schreiber F, Xu K.
    J Integr Bioinform; 2008 Nov 10; 5(1):. PubMed ID: 20134057
    [Abstract] [Full Text] [Related]

  • 8. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Nov 10; 939():21-34. PubMed ID: 23192538
    [Abstract] [Full Text] [Related]

  • 9. Efficient algorithms for detecting signaling pathways in protein interaction networks.
    Scott J, Ideker T, Karp RM, Sharan R.
    J Comput Biol; 2006 Mar 10; 13(2):133-44. PubMed ID: 16597231
    [Abstract] [Full Text] [Related]

  • 10. A query language for biological networks.
    Leser U.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii33-9. PubMed ID: 16204121
    [Abstract] [Full Text] [Related]

  • 11. Faspad: fast signaling pathway detection.
    Hüffner F, Wernicke S, Zichner T.
    Bioinformatics; 2007 Jul 01; 23(13):1708-9. PubMed ID: 17463016
    [Abstract] [Full Text] [Related]

  • 12. Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins.
    Li S, Choi KP, Wu T, Zhang L.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Jul 01; 10(6):1412-21. PubMed ID: 24407300
    [Abstract] [Full Text] [Related]

  • 13. From uncertain protein interaction networks to signaling pathways through intensive color coding.
    Gabr H, Dobra A, Kahveci T.
    Pac Symp Biocomput; 2013 Jul 01; ():111-22. PubMed ID: 23424117
    [Abstract] [Full Text] [Related]

  • 14. From pull-down data to protein interaction networks and complexes with biological relevance.
    Zhang B, Park BH, Karpinets T, Samatova NF.
    Bioinformatics; 2008 Apr 01; 24(7):979-86. PubMed ID: 18304937
    [Abstract] [Full Text] [Related]

  • 15. Discovering functional interdependence relationship in PPI networks for protein complex identification.
    Lam WW, Chan KC.
    IEEE Trans Biomed Eng; 2012 Apr 01; 59(4):899-908. PubMed ID: 21095855
    [Abstract] [Full Text] [Related]

  • 16. QPath: a method for querying pathways in a protein-protein interaction network.
    Shlomi T, Segal D, Ruppin E, Sharan R.
    BMC Bioinformatics; 2006 Apr 10; 7():199. PubMed ID: 16606460
    [Abstract] [Full Text] [Related]

  • 17. Identification of human protein complexes from local sub-graphs of protein-protein interaction network based on random forest with topological structure features.
    Li ZC, Lai YH, Chen LL, Zhou X, Dai Z, Zou XY.
    Anal Chim Acta; 2012 Mar 09; 718():32-41. PubMed ID: 22305895
    [Abstract] [Full Text] [Related]

  • 18. k-Partite cliques of protein interactions: A novel subgraph topology for functional coherence analysis on PPI networks.
    Liu Q, Chen YP, Li J.
    J Theor Biol; 2014 Jan 07; 340():146-54. PubMed ID: 24056214
    [Abstract] [Full Text] [Related]

  • 19. CABIN: collective analysis of biological interaction networks.
    Singhal M, Domico K.
    Comput Biol Chem; 2007 Jun 07; 31(3):222-5. PubMed ID: 17500038
    [Abstract] [Full Text] [Related]

  • 20. Detecting conserved interaction patterns in biological networks.
    Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A.
    J Comput Biol; 2006 Sep 07; 13(7):1299-322. PubMed ID: 17037960
    [Abstract] [Full Text] [Related]

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