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Journal Abstract Search

116 related items for PubMed ID: 18712306

  • 1. Prediction of regulatory elements.
    Sandelin A.
    Methods Mol Biol; 2008; 453():233-44. PubMed ID: 18712306
    [Abstract] [Full Text] [Related]

  • 2. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY, Kim Y.
    BMC Bioinformatics; 2006 Jul 04; 7():330. PubMed ID: 16817975
    [Abstract] [Full Text] [Related]

  • 3. Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
    Murakami K, Kojima T, Sakaki Y.
    BMC Genomics; 2004 Feb 23; 5(1):16. PubMed ID: 15053842
    [Abstract] [Full Text] [Related]

  • 4. Genome-wide prediction and analysis of function-specific transcription factor binding sites.
    Long F, Liu H, Hahn C, Sumazin P, Zhang MQ, Zilberstein A.
    In Silico Biol; 2004 Feb 23; 4(4):395-410. PubMed ID: 15506990
    [Abstract] [Full Text] [Related]

  • 5. Computational annotation of transcription factor binding sites in D. Melanogaster developmental genes.
    Narang V, Sung WK, Mittal A.
    Genome Inform; 2006 Feb 23; 17(2):14-24. PubMed ID: 17503375
    [Abstract] [Full Text] [Related]

  • 6. Computational approaches to finding and analyzing cis-regulatory elements.
    Brown CT.
    Methods Cell Biol; 2008 Feb 23; 87():337-65. PubMed ID: 18485306
    [Abstract] [Full Text] [Related]

  • 7. Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
    Kolchanov NA, Merkulova TI, Ignatieva EV, Ananko EA, Oshchepkov DY, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Charles Hodgman T.
    Brief Bioinform; 2007 Jul 23; 8(4):266-74. PubMed ID: 17627963
    [Abstract] [Full Text] [Related]

  • 8. Deciphering the cis-regulatory elements of co-expressed genes in PCOS by in silico analysis.
    Sarkar C, Maitra A.
    Gene; 2008 Jan 31; 408(1-2):72-84. PubMed ID: 18055135
    [Abstract] [Full Text] [Related]

  • 9. Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.
    Turatsinze JV, Thomas-Chollier M, Defrance M, van Helden J.
    Nat Protoc; 2008 Jan 31; 3(10):1578-88. PubMed ID: 18802439
    [Abstract] [Full Text] [Related]

  • 10. A statistical analysis of the TRANSFAC database.
    Fogel GB, Weekes DG, Varga G, Dow ER, Craven AM, Harlow HB, Su EW, Onyia JE, Su C.
    Biosystems; 2005 Aug 31; 81(2):137-54. PubMed ID: 15941617
    [Abstract] [Full Text] [Related]

  • 11. The cross-species prediction of bacterial promoters using a support vector machine.
    Towsey M, Timms P, Hogan J, Mathews SA.
    Comput Biol Chem; 2008 Oct 31; 32(5):359-66. PubMed ID: 18703385
    [Abstract] [Full Text] [Related]

  • 12. Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data.
    Sand O, Thomas-Chollier M, Vervisch E, van Helden J.
    Nat Protoc; 2008 Oct 31; 3(10):1604-15. PubMed ID: 18802441
    [Abstract] [Full Text] [Related]

  • 13. Identifying cis-regulatory elements by statistical analysis and phylogenetic footprinting and analyzing their coexistence and related gene ontology.
    Shi W, Zhou W, Xu D.
    Physiol Genomics; 2007 Nov 14; 31(3):374-84. PubMed ID: 17848606
    [Abstract] [Full Text] [Related]

  • 14. Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis.
    Ghedira K, Hornischer K, Konovalova T, Jenhani AZ, Benkahla A, Kel A.
    Infect Genet Evol; 2011 Jun 14; 11(4):769-77. PubMed ID: 21093613
    [Abstract] [Full Text] [Related]

  • 15. Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes.
    Espinosa V, González AD, Vasconcelos AT, Huerta AM, Collado-Vides J.
    J Mol Biol; 2005 Nov 18; 354(1):184-99. PubMed ID: 16236313
    [Abstract] [Full Text] [Related]

  • 16. ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.
    Cho SY, Chung M, Park M, Park S, Lee YS.
    Biochem Biophys Res Commun; 2008 May 09; 369(3):845-8. PubMed ID: 18325330
    [Abstract] [Full Text] [Related]

  • 17. Structural and bioinformatic analysis of the Roman snail Cd-Metallothionein gene uncovers molecular adaptation towards plasticity in coping with multifarious environmental stress.
    Egg M, Höckner M, Brandstätter A, Schuler D, Dallinger R.
    Mol Ecol; 2009 Jun 09; 18(11):2426-43. PubMed ID: 19457198
    [Abstract] [Full Text] [Related]

  • 18. Linking disease-associated genes to regulatory networks via promoter organization.
    Döhr S, Klingenhoff A, Maier H, Hrabé de Angelis M, Werner T, Schneider R.
    Nucleic Acids Res; 2005 Jun 09; 33(3):864-72. PubMed ID: 15701758
    [Abstract] [Full Text] [Related]

  • 19. FactorY, a bioinformatic resource for genome-wide promoter analysis.
    Guruceaga E, Segura V, Corrales FJ, Rubio A.
    Comput Biol Med; 2009 Apr 09; 39(4):385-7. PubMed ID: 19272592
    [Abstract] [Full Text] [Related]

  • 20. Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.
    Yan B, Methé BA, Lovley DR, Krushkal J.
    J Theor Biol; 2004 Sep 07; 230(1):133-44. PubMed ID: 15276006
    [Abstract] [Full Text] [Related]

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