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173 related items for PubMed ID: 18717543

  • 1. Estimation of the persistence length of DNA from the torsion elastic constant and supercoiling free energy: effect of ethylene glycol.
    Rangel DP, Fujimoto BS, Schurr JM.
    J Phys Chem B; 2008 Oct 23; 112(42):13359-66. PubMed ID: 18717543
    [Abstract] [Full Text] [Related]

  • 2. Effect of polyethylene glycol on the supercoiling free energy of DNA.
    Naimushin AN, Quach N, Fujimoto BS, Schurr JM.
    Biopolymers; 2001 Feb 23; 58(2):204-17. PubMed ID: 11093119
    [Abstract] [Full Text] [Related]

  • 3. Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs.
    Schurr JM, Babcock HP, Gebe JA.
    Biopolymers; 1995 Nov 23; 36(5):633-41. PubMed ID: 7578955
    [Abstract] [Full Text] [Related]

  • 4. Effects of small neutral osmolytes on the supercoiling free energy and intrinsic twist of p30delta DNA.
    Rangel DP, Sucato CA, Spink CH, Fujimoto BS, Schurr JM.
    Biopolymers; 2004 Nov 23; 75(4):291-313. PubMed ID: 15386272
    [Abstract] [Full Text] [Related]

  • 5. Effects of ethylene glycol on the torsion elastic constant and hydrodynamic radius of p30delta DNA.
    Rangel DP, Brewood GP, Fujimoto BS, Schurr JM.
    Biopolymers; 2007 Feb 15; 85(3):222-32. PubMed ID: 17111396
    [Abstract] [Full Text] [Related]

  • 6. A structural transition in duplex DNA induced by ethylene glycol.
    Brewood GP, Aliwarga T, Schurr JM.
    J Phys Chem B; 2008 Oct 23; 112(42):13367-80. PubMed ID: 18826186
    [Abstract] [Full Text] [Related]

  • 7. Calf-thymus topoisomerase I equilibrates metastable secondary structure subsequent to relaxation of superhelical stress.
    Brewood GP, Delrow JJ, Schurr JM.
    Biochemistry; 2010 Apr 27; 49(16):3367-80. PubMed ID: 20178373
    [Abstract] [Full Text] [Related]

  • 8. Effects of Na+ and Mg2+ on the structures of supercoiled DNAs: comparison of simulations with experiments.
    Gebe JA, Delrow JJ, Heath PJ, Fujimoto BS, Stewart DW, Schurr JM.
    J Mol Biol; 1996 Sep 20; 262(2):105-28. PubMed ID: 8831783
    [Abstract] [Full Text] [Related]

  • 9. Can reliable torsion elastic constants be determined from FPA data on 24 and 27 base-pair DNAs?
    Fujimoto BS, Schurr JM.
    Biophys Chem; 2005 Jun 01; 116(1):41-55. PubMed ID: 15911081
    [Abstract] [Full Text] [Related]

  • 10. On the origin of the temperature dependence of the supercoiling free energy.
    Delrow JJ, Heath PJ, Schurr JM.
    Biophys J; 1997 Nov 01; 73(5):2688-701. PubMed ID: 9370462
    [Abstract] [Full Text] [Related]

  • 11. The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation.
    Rybenkov VV, Vologodskii AV, Cozzarelli NR.
    J Mol Biol; 1997 Mar 28; 267(2):312-23. PubMed ID: 9096228
    [Abstract] [Full Text] [Related]

  • 12. The effect of changes in the bulk dielectric constant on the DNA torsional properties.
    de Souza FP, Neto AA, Fossey MA, Neto JR.
    Biopolymers; 2007 Nov 28; 87(4):244-8. PubMed ID: 17879331
    [Abstract] [Full Text] [Related]

  • 13. Conformational response of supercoiled DNA to confinement in a nanochannel.
    Lim W, Ng SY, Lee C, Feng YP, van der Maarel JR.
    J Chem Phys; 2008 Oct 28; 129(16):165102. PubMed ID: 19045317
    [Abstract] [Full Text] [Related]

  • 14. Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs.
    Gebe JA, Allison SA, Clendenning JB, Schurr JM.
    Biophys J; 1995 Feb 28; 68(2):619-33. PubMed ID: 7696514
    [Abstract] [Full Text] [Related]

  • 15. Monte Carlo simulations of locally melted supercoiled DNAs in 20 mM ionic strength.
    Sucato CA, Rangel DP, Aspleaf D, Fujimoto BS, Schurr JM.
    Biophys J; 2004 May 28; 86(5):3079-96. PubMed ID: 15111422
    [Abstract] [Full Text] [Related]

  • 16. Polymer induced condensation of DNA supercoils.
    Ramos JE, Neto JR, de Vries R.
    J Chem Phys; 2008 Nov 14; 129(18):185102. PubMed ID: 19045430
    [Abstract] [Full Text] [Related]

  • 17. Monte Carlo analysis of the conformation of DNA catenanes.
    Vologodskii AV, Cozzarelli NR.
    J Mol Biol; 1993 Aug 20; 232(4):1130-40. PubMed ID: 8371271
    [Abstract] [Full Text] [Related]

  • 18. Effect of ethidium binding and superhelix density on the supercoiling free energy and torsion and bending constants of p30 delta DNA.
    Clendenning JB, Naimushin AN, Fujimoto BS, Stewart DW, Schurr JM.
    Biophys Chem; 1994 Nov 20; 52(3):191-218. PubMed ID: 7999972
    [Abstract] [Full Text] [Related]

  • 19. The distribution of end-to-end distances of the weakly bending rod model.
    Schurr JM, Fujimoto BS.
    Biopolymers; 2000 Dec 20; 54(7):561-71. PubMed ID: 10984407
    [Abstract] [Full Text] [Related]

  • 20. Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation.
    Gebe JA, Schurr JM.
    Biopolymers; 1996 Apr 20; 38(4):493-503. PubMed ID: 8867211
    [Abstract] [Full Text] [Related]

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