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Journal Abstract Search

390 related items for PubMed ID: 18769540

  • 1. Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.
    Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ.
    PLoS One; 2008 Sep 03; 3(9):e3112. PubMed ID: 18769540
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  • 4. The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae.
    Teixeira MC, Monteiro PT, Guerreiro JF, Gonçalves JP, Mira NP, dos Santos SC, Cabrito TR, Palma M, Costa C, Francisco AP, Madeira SC, Oliveira AL, Freitas AT, Sá-Correia I.
    Nucleic Acids Res; 2014 Jan 03; 42(Database issue):D161-6. PubMed ID: 24170807
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  • 8. Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.
    Science; 2002 Oct 25; 298(5594):799-804. PubMed ID: 12399584
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  • 10. Protocol to probe how promoters decode TF dynamics in Saccharomyces cerevisiae by combining optogenetic control with microscopy.
    Sweeney K, Luffey EL, McClean MN.
    STAR Protoc; 2024 Sep 20; 5(3):103002. PubMed ID: 39003745
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  • 11. TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors.
    Foat BC, Tepper RG, Bussemaker HJ.
    Nucleic Acids Res; 2008 Jan 20; 36(Database issue):D125-31. PubMed ID: 17947326
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  • 14. Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data.
    Ma CZ, Brent MR.
    Bioinformatics; 2021 Jun 09; 37(9):1234-1245. PubMed ID: 33135076
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  • 15. De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae.
    Chen MJ, Chou LC, Hsieh TT, Lee DD, Liu KW, Yu CY, Oyang YJ, Tsai HK, Chen CY.
    Bioinformatics; 2012 Mar 01; 28(5):701-8. PubMed ID: 22238267
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  • 16. Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae.
    Liu G, Bergenholm D, Nielsen J.
    mBio; 2016 May 03; 7(3):. PubMed ID: 27143390
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  • 17. Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast.
    Yang TH.
    BMC Bioinformatics; 2019 Dec 27; 20(Suppl 23):630. PubMed ID: 31881824
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  • 18. Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.
    Haverty PM, Hansen U, Weng Z.
    Nucleic Acids Res; 2004 Dec 27; 32(1):179-88. PubMed ID: 14704355
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  • 19. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.
    Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sá-Correia I.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D446-51. PubMed ID: 16381908
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