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Journal Abstract Search

109 related items for PubMed ID: 18841244

  • 21. Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment.
    Grigoryev DN, Ma SF, Shimoda LA, Johns RA, Lee B, Garcia JG.
    Mol Cell Probes; 2007 Apr; 21(2):134-9. PubMed ID: 17071053
    [Abstract] [Full Text] [Related]

  • 22. The Affymetrix Medicago GeneChip® array is applicable for transcript analysis of alfalfa (Medicago sativa).
    Tesfaye M, Silverstein KAT, Bucciarelli B, Samac DA, Vance CP.
    Funct Plant Biol; 2006 Aug; 33(8):783-788. PubMed ID: 32689289
    [Abstract] [Full Text] [Related]

  • 23. In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.
    Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.
    BMC Genomics; 2005 May 04; 6():62. PubMed ID: 15871745
    [Abstract] [Full Text] [Related]

  • 24. Widespread existence of uncorrelated probe intensities from within the same probeset on Affymetrix GeneChips.
    Sanchez-Graillet O, Rowsell J, Langdon WB, Stalteri M, Arteaga-Salas JM, Upton GJ, Harrison AP.
    J Integr Bioinform; 2008 Aug 25; 5(2):. PubMed ID: 20134059
    [Abstract] [Full Text] [Related]

  • 25. Reproducible probe-level analysis of the Affymetrix Exon 1.0 ST array with R/Bioconductor.
    Rodrigo-Domingo M, Waagepetersen R, Bødker JS, Falgreen S, Kjeldsen MK, Johnsen HE, Dybkær K, Bøgsted M.
    Brief Bioinform; 2014 Jul 25; 15(4):519-33. PubMed ID: 23603090
    [Abstract] [Full Text] [Related]

  • 26. Effect of single nucleotide polymorphisms on Affymetrix match-mismatch probe pairs.
    Rouchka EC, Phatak AW, Singh AV.
    Bioinformation; 2008 Jul 14; 2(9):405-11. PubMed ID: 18795114
    [Abstract] [Full Text] [Related]

  • 27. Affy exon tissues: exon levels in normal tissues in human, mouse and rat.
    Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS.
    Bioinformatics; 2009 Sep 15; 25(18):2442-3. PubMed ID: 19570805
    [Abstract] [Full Text] [Related]

  • 28. Equalizer reduces SNP bias in Affymetrix microarrays.
    Quigley D.
    BMC Bioinformatics; 2015 Jul 30; 16(1):238. PubMed ID: 26223252
    [Abstract] [Full Text] [Related]

  • 29. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.
    BMC Bioinformatics; 2007 Apr 20; 8():132. PubMed ID: 17448222
    [Abstract] [Full Text] [Related]

  • 30. A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
    Xiao Y, Segal MR, Yang YH, Yeh RF.
    Bioinformatics; 2007 Jun 15; 23(12):1459-67. PubMed ID: 17459966
    [Abstract] [Full Text] [Related]

  • 31. Properties of signal intensities observed with individual probes of GeneChip Rat Gene 1.0 ST Array, an affymetric microarray system.
    Obana E, Hada T, Yamamoto T, Kakuhata R, Saze T, Miyoshi H, Hori T, Shinohara Y.
    Biotechnol Lett; 2012 Feb 15; 34(2):213-9. PubMed ID: 22009574
    [Abstract] [Full Text] [Related]

  • 32. Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.
    Langdon WB, Upton GJ, Harrison AP.
    Brief Bioinform; 2009 May 15; 10(3):259-77. PubMed ID: 19359259
    [Abstract] [Full Text] [Related]

  • 33. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
    Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F.
    Nucleic Acids Res; 2005 Nov 10; 33(20):e175. PubMed ID: 16284200
    [Abstract] [Full Text] [Related]

  • 34. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.
    BMC Genomics; 2006 Dec 27; 7():325. PubMed ID: 17192196
    [Abstract] [Full Text] [Related]

  • 35. Expression profiling using affymetrix genechip probe arrays.
    Schinke-Braun M, Couget JA.
    Methods Mol Biol; 2007 Dec 27; 366():13-40. PubMed ID: 17568117
    [Abstract] [Full Text] [Related]

  • 36. Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.
    D'mello V, Lee JY, MacDonald CC, Tian B.
    Appl Bioinformatics; 2006 Dec 27; 5(4):249-53. PubMed ID: 17140271
    [Abstract] [Full Text] [Related]

  • 37. ADAPT: a database of affymetrix probesets and transcripts.
    Leong HS, Yates T, Wilson C, Miller CJ.
    Bioinformatics; 2005 May 15; 21(10):2552-3. PubMed ID: 15746287
    [Abstract] [Full Text] [Related]

  • 38. Optimization of signal-to-noise ratio for efficient microarray probe design.
    Matveeva OV, Nechipurenko YD, Riabenko E, Ragan C, Nazipova NN, Ogurtsov AY, Shabalina SA.
    Bioinformatics; 2016 Sep 01; 32(17):i552-i558. PubMed ID: 27587674
    [Abstract] [Full Text] [Related]

  • 39. Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression.
    Zhang L, Yoder SJ, Enkemann SA.
    BMC Genomics; 2006 Jun 15; 7():153. PubMed ID: 16776839
    [Abstract] [Full Text] [Related]

  • 40. Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta.
    Güldener U, Seong KY, Boddu J, Cho S, Trail F, Xu JR, Adam G, Mewes HW, Muehlbauer GJ, Kistler HC.
    Fungal Genet Biol; 2006 May 15; 43(5):316-25. PubMed ID: 16531083
    [Abstract] [Full Text] [Related]

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