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Journal Abstract Search

344 related items for PubMed ID: 18852102

  • 1. The genetic code can cause systematic bias in simple phylogenetic models.
    Whelan S.
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec 27; 363(1512):4003-11. PubMed ID: 18852102
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  • 2. Spatial and temporal heterogeneity in nucleotide sequence evolution.
    Whelan S.
    Mol Biol Evol; 2008 Aug 27; 25(8):1683-94. PubMed ID: 18502771
    [Abstract] [Full Text] [Related]

  • 3. Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the good, the bad, and the ugly.
    Ruano-Rubio V, Fares MA.
    Syst Biol; 2007 Feb 27; 56(1):68-82. PubMed ID: 17366138
    [Abstract] [Full Text] [Related]

  • 4. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
    McCormack JE, Huang H, Knowles LL.
    Syst Biol; 2009 Oct 27; 58(5):501-8. PubMed ID: 20525604
    [Abstract] [Full Text] [Related]

  • 5. Codon substitution models based on residue similarity and their applications.
    Liu X, Liu H, Guo W, Yu K.
    Gene; 2012 Nov 01; 509(1):136-41. PubMed ID: 22902303
    [Abstract] [Full Text] [Related]

  • 6. An empirical codon model for protein sequence evolution.
    Kosiol C, Holmes I, Goldman N.
    Mol Biol Evol; 2007 Jul 01; 24(7):1464-79. PubMed ID: 17400572
    [Abstract] [Full Text] [Related]

  • 7. Effect of genetic convergence on phylogenetic inference.
    Christin PA, Besnard G, Edwards EJ, Salamin N.
    Mol Phylogenet Evol; 2012 Mar 01; 62(3):921-7. PubMed ID: 22197805
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  • 8. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
    Bao L, Gu H, Dunn KA, Bielawski JP.
    Mol Biol Evol; 2008 Sep 01; 25(9):1995-2007. PubMed ID: 18586695
    [Abstract] [Full Text] [Related]

  • 9. A Bayesian model comparison approach to inferring positive selection.
    Scheffler K, Seoighe C.
    Mol Biol Evol; 2005 Dec 01; 22(12):2531-40. PubMed ID: 16120799
    [Abstract] [Full Text] [Related]

  • 10. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC, Susko E, Roger AJ.
    Mol Biol Evol; 2014 Apr 01; 31(4):779-92. PubMed ID: 24441033
    [Abstract] [Full Text] [Related]

  • 11. The influence of phylogenetic uncertainty on the detection of positive Darwinian selection.
    Pie MR.
    Mol Biol Evol; 2006 Dec 01; 23(12):2274-8. PubMed ID: 16971694
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  • 18. Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets.
    García-Pereira MJ, Caballero A, Quesada H.
    Mol Biol Evol; 2010 May 01; 27(5):988-1000. PubMed ID: 20026482
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  • 20. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
    Mayrose I, Doron-Faigenboim A, Bacharach E, Pupko T.
    Bioinformatics; 2007 Jul 01; 23(13):i319-27. PubMed ID: 17646313
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