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256 related items for PubMed ID: 19045827

  • 1. Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks.
    Munsky B, Khammash M.
    IET Syst Biol; 2008 Sep; 2(5):323-33. PubMed ID: 19045827
    [Abstract] [Full Text] [Related]

  • 2. The finite state projection algorithm for the solution of the chemical master equation.
    Munsky B, Khammash M.
    J Chem Phys; 2006 Jan 28; 124(4):044104. PubMed ID: 16460146
    [Abstract] [Full Text] [Related]

  • 3. On the attenuation and amplification of molecular noise in genetic regulatory networks.
    Chen BS, Wang YC.
    BMC Bioinformatics; 2006 Feb 02; 7():52. PubMed ID: 16457708
    [Abstract] [Full Text] [Related]

  • 4. Reduction and solution of the chemical master equation using time scale separation and finite state projection.
    Peles S, Munsky B, Khammash M.
    J Chem Phys; 2006 Nov 28; 125(20):204104. PubMed ID: 17144687
    [Abstract] [Full Text] [Related]

  • 5. Variable-free exploration of stochastic models: a gene regulatory network example.
    Erban R, Frewen TA, Wang X, Elston TC, Coifman R, Nadler B, Kevrekidis IG.
    J Chem Phys; 2007 Apr 21; 126(15):155103. PubMed ID: 17461667
    [Abstract] [Full Text] [Related]

  • 6. Sequential estimation for prescribed statistical accuracy in stochastic simulation of biological systems.
    Sandmann W.
    Math Biosci; 2009 Sep 21; 221(1):43-53. PubMed ID: 19576907
    [Abstract] [Full Text] [Related]

  • 7. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
    Spicher A, Michel O, Cieslak M, Giavitto JL, Prusinkiewicz P.
    Biosystems; 2008 Mar 21; 91(3):458-72. PubMed ID: 17728055
    [Abstract] [Full Text] [Related]

  • 8. Modelling metapopulations with stochastic membrane systems.
    Besozzi D, Cazzaniga P, Pescini D, Mauri G.
    Biosystems; 2008 Mar 21; 91(3):499-514. PubMed ID: 17904729
    [Abstract] [Full Text] [Related]

  • 9. Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data.
    David LA, Wiggins CH.
    Ann N Y Acad Sci; 2007 Dec 21; 1115():90-101. PubMed ID: 17925346
    [Abstract] [Full Text] [Related]

  • 10. On robust stability of stochastic genetic regulatory networks with time delays: a delay fractioning approach.
    Wang Y, Wang Z, Liang J.
    IEEE Trans Syst Man Cybern B Cybern; 2010 Jun 21; 40(3):729-40. PubMed ID: 19884095
    [Abstract] [Full Text] [Related]

  • 11. An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks.
    Salis H, Kaznessis YN.
    J Chem Phys; 2005 Dec 01; 123(21):214106. PubMed ID: 16356038
    [Abstract] [Full Text] [Related]

  • 12. Detailed comparison between StochSim and SSA.
    Liu Z, Cao Y.
    IET Syst Biol; 2008 Sep 01; 2(5):334-41. PubMed ID: 19045828
    [Abstract] [Full Text] [Related]

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  • 15. Stability of functions in Boolean models of gene regulatory networks.
    Rämö P, Kesseli J, Yli-Harja O.
    Chaos; 2005 Sep 01; 15(3):34101. PubMed ID: 16252995
    [Abstract] [Full Text] [Related]

  • 16. Steady-state expression of self-regulated genes.
    Fournier T, Gabriel JP, Mazza C, Pasquier J, Galbete JL, Mermod N.
    Bioinformatics; 2007 Dec 01; 23(23):3185-92. PubMed ID: 17933850
    [Abstract] [Full Text] [Related]

  • 17. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
    Salis H, Kaznessis Y.
    J Chem Phys; 2005 Feb 01; 122(5):54103. PubMed ID: 15740306
    [Abstract] [Full Text] [Related]

  • 18. Stochastic model simulation using Kronecker product analysis and Zassenhaus formula approximation.
    Caglar MU, Pal R.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Feb 01; 10(5):1125-36. PubMed ID: 24384703
    [Abstract] [Full Text] [Related]

  • 19. Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.
    Macnamara S, Bersani AM, Burrage K, Sidje RB.
    J Chem Phys; 2008 Sep 07; 129(9):095105. PubMed ID: 19044893
    [Abstract] [Full Text] [Related]

  • 20. Approximation scheme based on effective interactions for stochastic gene regulation.
    Ohkubo J.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Apr 07; 83(4 Pt 1):041915. PubMed ID: 21599208
    [Abstract] [Full Text] [Related]

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