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Journal Abstract Search

164 related items for PubMed ID: 19045828

  • 1. Detailed comparison between StochSim and SSA.
    Liu Z, Cao Y.
    IET Syst Biol; 2008 Sep; 2(5):334-41. PubMed ID: 19045828
    [Abstract] [Full Text] [Related]

  • 2. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
    Spicher A, Michel O, Cieslak M, Giavitto JL, Prusinkiewicz P.
    Biosystems; 2008 Mar; 91(3):458-72. PubMed ID: 17728055
    [Abstract] [Full Text] [Related]

  • 3. Modelling metapopulations with stochastic membrane systems.
    Besozzi D, Cazzaniga P, Pescini D, Mauri G.
    Biosystems; 2008 Mar; 91(3):499-514. PubMed ID: 17904729
    [Abstract] [Full Text] [Related]

  • 4. Adaptive tree-based search for stochastic simulation algorithm.
    Thanh VH, Zunino R.
    Int J Comput Biol Drug Des; 2014 Mar; 7(4):341-57. PubMed ID: 25539846
    [Abstract] [Full Text] [Related]

  • 5. The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior.
    McCollum JM, Peterson GD, Cox CD, Simpson ML, Samatova NF.
    Comput Biol Chem; 2006 Feb; 30(1):39-49. PubMed ID: 16321569
    [Abstract] [Full Text] [Related]

  • 6. P systems applications to systems biology.
    Gheorghe M, Krasnogor N, Camara M.
    Biosystems; 2008 Mar; 91(3):435-7. PubMed ID: 17728056
    [No Abstract] [Full Text] [Related]

  • 7. Biological networks in metabolic P systems.
    Manca V, Bianco L.
    Biosystems; 2008 Mar; 91(3):489-98. PubMed ID: 17761386
    [Abstract] [Full Text] [Related]

  • 8. Modelling gene expression control using P systems: The Lac Operon, a case study.
    Romero-Campero FJ, Pérez-Jiménez MJ.
    Biosystems; 2008 Mar; 91(3):438-57. PubMed ID: 17822838
    [Abstract] [Full Text] [Related]

  • 9. On the relationship between membranes and ambients.
    Ciobanu G, Aman B.
    Biosystems; 2008 Mar; 91(3):515-30. PubMed ID: 18006218
    [Abstract] [Full Text] [Related]

  • 10. Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks.
    Munsky B, Khammash M.
    IET Syst Biol; 2008 Sep; 2(5):323-33. PubMed ID: 19045827
    [Abstract] [Full Text] [Related]

  • 11. Data requirements of reverse-engineering algorithms.
    Just W.
    Ann N Y Acad Sci; 2007 Dec; 1115():142-53. PubMed ID: 17925350
    [Abstract] [Full Text] [Related]

  • 12. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
    Eccher C, Priami C.
    Bioinformatics; 2006 Dec 15; 22(24):3075-81. PubMed ID: 17046974
    [Abstract] [Full Text] [Related]

  • 13. Algorithmic issues in reverse engineering of protein and gene networks via the modular response analysis method.
    Berman P, Dasgupta B, Sontag E.
    Ann N Y Acad Sci; 2007 Dec 15; 1115():132-41. PubMed ID: 17925351
    [Abstract] [Full Text] [Related]

  • 14. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
    Salis H, Kaznessis Y.
    J Chem Phys; 2005 Feb 01; 122(5):54103. PubMed ID: 15740306
    [Abstract] [Full Text] [Related]

  • 15. Gene regulatory network inference: data integration in dynamic models-a review.
    Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.
    Biosystems; 2009 Apr 01; 96(1):86-103. PubMed ID: 19150482
    [Abstract] [Full Text] [Related]

  • 16. Functional annotation of regulatory pathways.
    Pandey J, Koyutürk M, Kim Y, Szpankowski W, Subramaniam S, Grama A.
    Bioinformatics; 2007 Jul 01; 23(13):i377-86. PubMed ID: 17646320
    [Abstract] [Full Text] [Related]

  • 17. Variable-free exploration of stochastic models: a gene regulatory network example.
    Erban R, Frewen TA, Wang X, Elston TC, Coifman R, Nadler B, Kevrekidis IG.
    J Chem Phys; 2007 Apr 21; 126(15):155103. PubMed ID: 17461667
    [Abstract] [Full Text] [Related]

  • 18. Exact stochastic simulation of coupled chemical reactions with delays.
    Cai X.
    J Chem Phys; 2007 Mar 28; 126(12):124108. PubMed ID: 17411109
    [Abstract] [Full Text] [Related]

  • 19. New approaches to modelling and analysis of biochemical reactions, pathways and networks.
    Crampin EJ, Schnell S.
    Prog Biophys Mol Biol; 2004 Sep 28; 86(1):1-4. PubMed ID: 15261523
    [No Abstract] [Full Text] [Related]

  • 20. Serially regulated biological networks fully realise a constrained set of functions.
    Mugler A, Ziv E, Nemenman I, Wiggins CH.
    IET Syst Biol; 2008 Sep 28; 2(5):313-22. PubMed ID: 19045826
    [Abstract] [Full Text] [Related]

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