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829 related items for PubMed ID: 19067549

  • 1. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
    Chebaro Y, Dong X, Laghaei R, Derreumaux P, Mousseau N.
    J Phys Chem B; 2009 Jan 08; 113(1):267-74. PubMed ID: 19067549
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  • 4. Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent.
    Periole X, Mark AE.
    J Chem Phys; 2007 Jan 07; 126(1):014903. PubMed ID: 17212515
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  • 5. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH, Mu Y, Stock G.
    Proteins; 2005 Aug 15; 60(3):485-94. PubMed ID: 15977160
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  • 6. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R.
    Proteins; 2003 Nov 01; 53(2):148-61. PubMed ID: 14517967
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  • 8. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
    Cao Z, Liu L, Wu P, Wang J.
    Acta Biochim Biophys Sin (Shanghai); 2011 Mar 01; 43(3):172-80. PubMed ID: 21289072
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  • 10. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model.
    Jang S, Kim E, Pak Y.
    Proteins; 2007 Jan 01; 66(1):53-60. PubMed ID: 17063490
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  • 11. A molecular dynamics study of the correlations between solvent-accessible surface, molecular volume, and folding state.
    Floriano WB, Domont GB, Nascimento MA.
    J Phys Chem B; 2007 Feb 22; 111(7):1893-9. PubMed ID: 17261064
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  • 13. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
    Seibert MM, Patriksson A, Hess B, van der Spoel D.
    J Mol Biol; 2005 Nov 18; 354(1):173-83. PubMed ID: 16236315
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  • 17. Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations.
    Kannan S, Zacharias M.
    Proteins; 2009 Aug 01; 76(2):448-60. PubMed ID: 19173315
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  • 18. Exploring the protein folding free energy landscape: coupling replica exchange method with P3ME/RESPA algorithm.
    Zhou R.
    J Mol Graph Model; 2004 May 01; 22(5):451-63. PubMed ID: 15099840
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  • 20. Coarse-grained protein molecular dynamics simulations.
    Derreumaux P, Mousseau N.
    J Chem Phys; 2007 Jan 14; 126(2):025101. PubMed ID: 17228975
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