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Journal Abstract Search

121 related items for PubMed ID: 19140326

  • 1. [The relationship between protein accessible surface area and number of native contacts in its structure].
    Bogatyreva NS, Ivankov DN.
    Mol Biol (Mosk); 2008; 42(6):1048-55. PubMed ID: 19140326
    [Abstract] [Full Text] [Related]

  • 2. Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins.
    Pereira de Araújo AF, Gomes AL, Bursztyn AA, Shakhnovich EI.
    Proteins; 2008 Feb 15; 70(3):971-83. PubMed ID: 17847091
    [Abstract] [Full Text] [Related]

  • 3. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking.
    Li AJ, Nussinov R.
    Proteins; 1998 Jul 01; 32(1):111-27. PubMed ID: 9672047
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  • 4. Atomic environment energies in proteins defined from statistics of accessible and contact surface areas.
    Delarue M, Koehl P.
    J Mol Biol; 1995 Jun 09; 249(3):675-90. PubMed ID: 7783220
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  • 5. Predicting absolute contact numbers of native protein structure from amino acid sequence.
    Kinjo AR, Horimoto K, Nishikawa K.
    Proteins; 2005 Jan 01; 58(1):158-65. PubMed ID: 15523668
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  • 6. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
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  • 16. A new analytical method for computing solvent-accessible surface area of macromolecules and its gradients.
    Hayryan S, Hu CK, Skrivánek J, Hayryane E, Pokorný I.
    J Comput Chem; 2005 Mar 27; 26(4):334-43. PubMed ID: 15643653
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  • 17. A method for detecting hydrophobic patches on protein surfaces.
    Lijnzaad P, Berendsen HJ, Argos P.
    Proteins; 1996 Oct 27; 26(2):192-203. PubMed ID: 8916227
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  • 18. Occluded molecular surface: analysis of protein packing.
    Pattabiraman N, Ward KB, Fleming PJ.
    J Mol Recognit; 1995 Oct 27; 8(6):334-44. PubMed ID: 9052974
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  • 19. Surprisingly high correlation between early and late stages in non-two-state protein folding.
    Kamagata K, Kuwajima K.
    J Mol Biol; 2006 Apr 14; 357(5):1647-54. PubMed ID: 16490205
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  • 20. [Estimation of quality of approximation of atom-atom contacts of amino acid residues in proteins by the contacts of the residue force centers].
    Lobanov MIu, Rykunov DS, Finkel'shteĭn AV.
    Biofizika; 1998 Apr 14; 43(2):215-22. PubMed ID: 9591097
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