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Journal Abstract Search

234 related items for PubMed ID: 19173310

  • 1. Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates.
    Levy R, Edelman M, Sobolev V.
    Proteins; 2009 Aug 01; 76(2):365-74. PubMed ID: 19173310
    [Abstract] [Full Text] [Related]

  • 2. Exploiting 3D structural templates for detection of metal-binding sites in protein structures.
    Goyal K, Mande SC.
    Proteins; 2008 Mar 01; 70(4):1206-18. PubMed ID: 17847089
    [Abstract] [Full Text] [Related]

  • 3. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C, Pollastri G.
    Proteins; 2009 Oct 01; 77(1):181-90. PubMed ID: 19422056
    [Abstract] [Full Text] [Related]

  • 4. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    Kundrotas PJ, Lensink MF, Alexov E.
    Int J Biol Macromol; 2008 Aug 15; 43(2):198-208. PubMed ID: 18572239
    [Abstract] [Full Text] [Related]

  • 5. Flexibility of metal binding sites in proteins on a database scale.
    Babor M, Greenblatt HM, Edelman M, Sobolev V.
    Proteins; 2005 May 01; 59(2):221-30. PubMed ID: 15726624
    [Abstract] [Full Text] [Related]

  • 6. Metalloproteomics: high-throughput structural and functional annotation of proteins in structural genomics.
    Shi W, Zhan C, Ignatov A, Manjasetty BA, Marinkovic N, Sullivan M, Huang R, Chance MR.
    Structure; 2005 Oct 01; 13(10):1473-86. PubMed ID: 16216579
    [Abstract] [Full Text] [Related]

  • 7. Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment.
    Ginalski K, Rychlewski L.
    Proteins; 2003 Oct 01; 53 Suppl 6():410-7. PubMed ID: 14579329
    [Abstract] [Full Text] [Related]

  • 8. Protein-binding site prediction based on three-dimensional protein modeling.
    Oh M, Joo K, Lee J.
    Proteins; 2009 Oct 01; 77 Suppl 9():152-6. PubMed ID: 19768678
    [Abstract] [Full Text] [Related]

  • 9. N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.
    Maurer-Stroh S, Eisenhaber B, Eisenhaber F.
    J Mol Biol; 2002 Apr 05; 317(4):541-57. PubMed ID: 11955008
    [Abstract] [Full Text] [Related]

  • 10. Structural analysis of metal sites in proteins: non-heme iron sites as a case study.
    Andreini C, Bertini I, Cavallaro G, Najmanovich RJ, Thornton JM.
    J Mol Biol; 2009 May 01; 388(2):356-80. PubMed ID: 19265704
    [Abstract] [Full Text] [Related]

  • 11. Sequence comparison and protein structure prediction.
    Dunbrack RL.
    Curr Opin Struct Biol; 2006 Jun 01; 16(3):374-84. PubMed ID: 16713709
    [Abstract] [Full Text] [Related]

  • 12. Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity.
    Kinch LN, Grishin NV.
    Proteins; 2002 Jul 01; 48(1):75-84. PubMed ID: 12012339
    [Abstract] [Full Text] [Related]

  • 13. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 14. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.
    Stevens FJ, Kuemmel C, Babnigg G, Collart FR.
    J Mol Recognit; 2005 Feb 15; 18(2):150-7. PubMed ID: 15593246
    [Abstract] [Full Text] [Related]

  • 15. An introduction to protein contact prediction.
    Hamilton N, Huber T.
    Methods Mol Biol; 2008 Feb 15; 453():87-104. PubMed ID: 18712298
    [Abstract] [Full Text] [Related]

  • 16. Prediction of protein subcellular localization.
    Yu CS, Chen YC, Lu CH, Hwang JK.
    Proteins; 2006 Aug 15; 64(3):643-51. PubMed ID: 16752418
    [Abstract] [Full Text] [Related]

  • 17. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
    La D, Livesay DR.
    BMC Bioinformatics; 2005 May 13; 6():116. PubMed ID: 15890082
    [Abstract] [Full Text] [Related]

  • 18. TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.
    Wallace AC, Borkakoti N, Thornton JM.
    Protein Sci; 1997 Nov 13; 6(11):2308-23. PubMed ID: 9385633
    [Abstract] [Full Text] [Related]

  • 19. Conservation of metal-coordinating residues.
    Kasampalidis IN, Pitas I, Lyroudia K.
    Proteins; 2007 Jul 01; 68(1):123-30. PubMed ID: 17393459
    [Abstract] [Full Text] [Related]

  • 20. Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
    Aloy P, Querol E, Aviles FX, Sternberg MJ.
    J Mol Biol; 2001 Aug 10; 311(2):395-408. PubMed ID: 11478868
    [Abstract] [Full Text] [Related]

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