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Journal Abstract Search

69 related items for PubMed ID: 19193148

  • 1. Higher-order genomic organization of cellular functions in yeast.
    Tuller T, Rubinstein U, Bar D, Gurevitch M, Ruppin E, Kupiec M.
    J Comput Biol; 2009 Feb; 16(2):303-16. PubMed ID: 19193148
    [Abstract] [Full Text] [Related]

  • 2. Statistical analysis of global connectivity and activity distributions in cellular networks.
    López García De Lomana A, Beg QK, De Fabritiis G, Villà-Freixa J.
    J Comput Biol; 2010 Jul; 17(7):869-78. PubMed ID: 20632868
    [Abstract] [Full Text] [Related]

  • 3. Systematic Identification, Characterization, and Conservation of Adjacent-Gene Coregulation in the Budding Yeast Saccharomyces cerevisiae.
    Eldabagh RS, Mejia NG, Barrett RL, Monzo CR, So MK, Foley JJ, Arnone JT.
    mSphere; 2018 Jun 27; 3(3):. PubMed ID: 29898982
    [Abstract] [Full Text] [Related]

  • 4. Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
    Snitkin ES, Gustafson AM, Mellor J, Wu J, DeLisi C.
    BMC Bioinformatics; 2006 Sep 27; 7():420. PubMed ID: 17005048
    [Abstract] [Full Text] [Related]

  • 5. Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes.
    Snel B, van Noort V, Huynen MA.
    Nucleic Acids Res; 2004 Sep 27; 32(16):4725-31. PubMed ID: 15353560
    [Abstract] [Full Text] [Related]

  • 6. Yeast "operons".
    Zhang X, Smith TF.
    Microb Comp Genomics; 1998 Sep 27; 3(2):133-40. PubMed ID: 9697097
    [Abstract] [Full Text] [Related]

  • 7. Genomic analysis of the hierarchical structure of regulatory networks.
    Yu H, Gerstein M.
    Proc Natl Acad Sci U S A; 2006 Oct 03; 103(40):14724-31. PubMed ID: 17003135
    [Abstract] [Full Text] [Related]

  • 8. Chromosomal organization is shaped by the transcription regulatory network.
    Hershberg R, Yeger-Lotem E, Margalit H.
    Trends Genet; 2005 Mar 03; 21(3):138-42. PubMed ID: 15734572
    [Abstract] [Full Text] [Related]

  • 9. Comparative evolutionary analysis of protein complexes in E. coli and yeast.
    Reid AJ, Ranea JA, Orengo CA.
    BMC Genomics; 2010 Feb 01; 11():79. PubMed ID: 20122144
    [Abstract] [Full Text] [Related]

  • 10. Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information.
    de Matos Simoes R, Dehmer M, Emmert-Streib F.
    BMC Genomics; 2013 May 11; 14():324. PubMed ID: 23663484
    [Abstract] [Full Text] [Related]

  • 11. Comparative study of the transcriptional regulatory networks of E. coli and yeast: structural characteristics leading to marginal dynamic stability.
    Lee DS, Rieger H.
    J Theor Biol; 2007 Oct 21; 248(4):618-26. PubMed ID: 17692874
    [Abstract] [Full Text] [Related]

  • 12. Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.
    Science; 2002 Oct 25; 298(5594):799-804. PubMed ID: 12399584
    [Abstract] [Full Text] [Related]

  • 13. Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae.
    Jardine O, Gough J, Chothia C, Teichmann SA.
    Genome Res; 2002 Jun 25; 12(6):916-29. PubMed ID: 12045145
    [Abstract] [Full Text] [Related]

  • 14. Gene regulatory network growth by duplication.
    Teichmann SA, Babu MM.
    Nat Genet; 2004 May 25; 36(5):492-6. PubMed ID: 15107850
    [Abstract] [Full Text] [Related]

  • 15. CSN: unsupervised approach for inferring biological networks based on the genome alone.
    Galili M, Tuller T.
    BMC Bioinformatics; 2020 May 15; 21(1):190. PubMed ID: 32414319
    [Abstract] [Full Text] [Related]

  • 16. Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context.
    Moreno-Hagelsieb G, Collado-Vides J.
    In Silico Biol; 2002 May 15; 2(2):87-95. PubMed ID: 12066843
    [Abstract] [Full Text] [Related]

  • 17. Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data.
    Oakley TH, Gu Z, Abouheif E, Patel NH, Li WH.
    Mol Biol Evol; 2005 Jan 15; 22(1):40-50. PubMed ID: 15356281
    [Abstract] [Full Text] [Related]

  • 18. Inversions and the dynamics of eukaryotic gene order.
    Huynen MA, Snel B, Bork P.
    Trends Genet; 2001 Jun 15; 17(6):304-6. PubMed ID: 11377779
    [Abstract] [Full Text] [Related]

  • 19. Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.
    Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A.
    Mol Biosyst; 2009 Dec 15; 5(12):1439-55. PubMed ID: 19763343
    [Abstract] [Full Text] [Related]

  • 20. Spatial features for Escherichia coli genome organization.
    Xie T, Fu LY, Yang QY, Xiong H, Xu H, Ma BG, Zhang HY.
    BMC Genomics; 2015 Feb 05; 16(1):37. PubMed ID: 25652224
    [Abstract] [Full Text] [Related]

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