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257 related items for PubMed ID: 19223214

  • 21. Molecular dynamics simulations of the hyperthermophilic protein sac7d from Sulfolobus acidocaldarius: contribution of salt bridges to thermostability.
    de Bakker PI, Hünenberger PH, McCammon JA.
    J Mol Biol; 1999 Jan 29; 285(4):1811-30. PubMed ID: 9917414
    [Abstract] [Full Text] [Related]

  • 22. Protein folding in mode space: a collective coordinate approach to structure prediction.
    Abseher R, Nilges M.
    Proteins; 2002 Nov 15; 49(3):365-77. PubMed ID: 12360526
    [Abstract] [Full Text] [Related]

  • 23. Cold adaptation of enzyme reaction rates.
    Bjelic S, Brandsdal BO, Aqvist J.
    Biochemistry; 2008 Sep 23; 47(38):10049-57. PubMed ID: 18759500
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  • 24. Structural adaptation to low temperatures--analysis of the subunit interface of oligomeric psychrophilic enzymes.
    Tronelli D, Maugini E, Bossa F, Pascarella S.
    FEBS J; 2007 Sep 23; 274(17):4595-608. PubMed ID: 17697122
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  • 25. Protein flexibility: multiple molecular dynamics simulations of insulin chain B.
    Legge FS, Budi A, Treutlein H, Yarovsky I.
    Biophys Chem; 2006 Jan 20; 119(2):146-57. PubMed ID: 16129550
    [Abstract] [Full Text] [Related]

  • 26. Effects of environment on the structure of Pyrococcus furiosus rubredoxin: a molecular dynamics study.
    Ergenekan CE, Tan ML, Ichiye T.
    Proteins; 2005 Dec 01; 61(4):823-8. PubMed ID: 16245319
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  • 27. Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model.
    Mitomo D, Nakamura HK, Ikeda K, Yamagishi A, Higo J.
    Proteins; 2006 Sep 01; 64(4):883-94. PubMed ID: 16807919
    [Abstract] [Full Text] [Related]

  • 28. Protein folding and unfolding by all-atom molecular dynamics simulations.
    Lei H, Duan Y.
    Methods Mol Biol; 2008 Sep 01; 443():277-95. PubMed ID: 18446293
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  • 29. Conformational states and folding pathways of peptides revealed by principal-independent component analyses.
    Nguyen PH.
    Proteins; 2007 May 15; 67(3):579-92. PubMed ID: 17348012
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  • 30. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S, Zacharias M.
    J Struct Biol; 2009 Jun 15; 166(3):288-94. PubMed ID: 19272454
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  • 31. Low-temperature protein dynamics: a simulation analysis of interprotein vibrations and the boson peak at 150 k.
    Kurkal-Siebert V, Smith JC.
    J Am Chem Soc; 2006 Feb 22; 128(7):2356-64. PubMed ID: 16478191
    [Abstract] [Full Text] [Related]

  • 32. Thermal stability and unfolding pathways of hyperthermophilic and mesophilic periplasmic binding proteins studied by molecular dynamics simulation.
    Chen L, Li X, Wang R, Fang F, Yang W, Kan W.
    J Biomol Struct Dyn; 2016 Jul 22; 34(7):1576-89. PubMed ID: 26292713
    [Abstract] [Full Text] [Related]

  • 33. Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.
    Glyakina AV, Garbuzynskiy SO, Lobanov MY, Galzitskaya OV.
    Bioinformatics; 2007 Sep 01; 23(17):2231-8. PubMed ID: 17599925
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  • 34. Do homologous thermophilic-mesophilic proteins exhibit similar structures and dynamics at optimal growth temperatures? A molecular dynamics simulation study.
    Basu S, Sen S.
    J Chem Inf Model; 2013 Feb 25; 53(2):423-34. PubMed ID: 23267663
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  • 35. Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: the myoglobin case.
    Papaleo E, Mereghetti P, Fantucci P, Grandori R, De Gioia L.
    J Mol Graph Model; 2009 Feb 25; 27(8):889-99. PubMed ID: 19264523
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  • 36. An electrostatic basis for the stability of thermophilic proteins.
    Dominy BN, Minoux H, Brooks CL.
    Proteins; 2004 Oct 01; 57(1):128-41. PubMed ID: 15326599
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  • 37. Dynamics and cooperativity of Trp-cage folding.
    Hu Z, Tang Y, Wang H, Zhang X, Lei M.
    Arch Biochem Biophys; 2008 Jul 15; 475(2):140-7. PubMed ID: 18474213
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  • 38. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF, Grubmüller H.
    J Phys Chem B; 2006 Nov 16; 110(45):22842-52. PubMed ID: 17092036
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  • 39. Molecular cold-adaptation: comparative analysis of two homologous families of psychrophilic and mesophilic signal proteins of the protozoan ciliate, Euplotes.
    Alimenti C, Vallesi A, Pedrini B, Wüthrich K, Luporini P.
    IUBMB Life; 2009 Aug 16; 61(8):838-45. PubMed ID: 19621350
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  • 40. Mechanical unfolding of proteins L and G with constant force: similarities and differences.
    Glyakina AV, Balabaev NK, Galzitskaya OV.
    J Chem Phys; 2009 Jul 28; 131(4):045102. PubMed ID: 19655923
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