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151 related items for PubMed ID: 19225675

  • 1. Probing specific RNA bulge conformations by modified fluorescent nucleosides.
    Jeong HS, Kang S, Lee JY, Kim BH.
    Org Biomol Chem; 2009 Mar 07; 7(5):921-5. PubMed ID: 19225675
    [Abstract] [Full Text] [Related]

  • 2. Dynamic ensemble view of the conformational landscape of HIV-1 TAR RNA and allosteric recognition.
    Lu J, Kadakkuzha BM, Zhao L, Fan M, Qi X, Xia T.
    Biochemistry; 2011 Jun 07; 50(22):5042-57. PubMed ID: 21553929
    [Abstract] [Full Text] [Related]

  • 3. Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.
    Zacharias M, Sklenar H.
    J Mol Biol; 1999 Jun 04; 289(2):261-75. PubMed ID: 10366504
    [Abstract] [Full Text] [Related]

  • 4. Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation.
    Dayie KT, Brodsky AS, Williamson JR.
    J Mol Biol; 2002 Mar 22; 317(2):263-78. PubMed ID: 11902842
    [Abstract] [Full Text] [Related]

  • 5. RNA as scaffold for pyrene excited complexes.
    Grünewald C, Kwon T, Piton N, Förster U, Wachtveitl J, Engels JW.
    Bioorg Med Chem; 2008 Jan 01; 16(1):19-26. PubMed ID: 17512739
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  • 6. Binding of a dinuclear ruthenium(ii) complex to the TAR region of the HIV-AIDS viral RNA.
    Buck DP, Spillane CB, Collins JG, Keene FR.
    Mol Biosyst; 2008 Aug 01; 4(8):851-4. PubMed ID: 18633486
    [Abstract] [Full Text] [Related]

  • 7. Investigation of potential RNA bulge stabilizing elements.
    Sandbrink J, Ossipov D, Aström H, Strömberg R.
    J Mol Recognit; 2005 Aug 01; 18(4):318-26. PubMed ID: 15756640
    [Abstract] [Full Text] [Related]

  • 8. Probing RNA-protein interactions using pyrene-labeled oligodeoxynucleotides: Qbeta replicase efficiently binds small RNAs by recognizing pyrimidine residues.
    Preuss R, Dapprich J, Walter NG.
    J Mol Biol; 1997 Oct 31; 273(3):600-13. PubMed ID: 9356249
    [Abstract] [Full Text] [Related]

  • 9. A molecular mechanics investigation of RNA complexes. I. Ethidium intercalation in an HIV-1 TAR RNA sequence with an unpaired adenosine.
    Yao S, Wilson WD.
    J Biomol Struct Dyn; 1992 Oct 31; 10(2):367-87. PubMed ID: 1466814
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  • 10. Probing RNA conformational dynamics and heterogeneity using femtosecond time-resolved fluorescence spectroscopy.
    Zhao L, Xia T.
    Methods; 2009 Oct 31; 49(2):128-35. PubMed ID: 19362148
    [Abstract] [Full Text] [Related]

  • 11. Design of novel RNA ligands that bind stem-bulge HIV-1 TAR RNA.
    Duca M, Malnuit V, Barbault F, Benhida R.
    Chem Commun (Camb); 2010 Sep 07; 46(33):6162-4. PubMed ID: 20652190
    [Abstract] [Full Text] [Related]

  • 12. Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries.
    Ferner J, Suhartono M, Breitung S, Jonker HR, Hennig M, Wöhnert J, Göbel M, Schwalbe H.
    Chembiochem; 2009 Jun 15; 10(9):1490-4. PubMed ID: 19444830
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  • 13. Fluorescence correlation spectroscopy at single molecule level on the Tat-TAR complex and its inhibitors.
    Nandi CK, Parui PP, Brutschy B, Scheffer U, Göbel M.
    Biopolymers; 2008 Jan 15; 89(1):17-25. PubMed ID: 17764074
    [Abstract] [Full Text] [Related]

  • 14. Modulation of pyrene fluorescence in DNA probes depends upon the nature of the conformationally restricted nucleotide.
    Honcharenko D, Zhou C, Chattopadhyaya J.
    J Org Chem; 2008 Apr 04; 73(7):2829-42. PubMed ID: 18331060
    [Abstract] [Full Text] [Related]

  • 15. RNA bulge entropies in the unbound state correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access.
    Lustig B, Bahar I, Jernigan RL.
    Nucleic Acids Res; 1998 Nov 15; 26(22):5212-7. PubMed ID: 9801321
    [Abstract] [Full Text] [Related]

  • 16. A distance ruler for RNA using EPR and site-directed spin labeling.
    Kim NK, Murali A, DeRose VJ.
    Chem Biol; 2004 Jul 15; 11(7):939-48. PubMed ID: 15271352
    [Abstract] [Full Text] [Related]

  • 17. Fluorescence quenching properties of multiple pyrene-modified RNAs.
    Maie K, Nakamura M, Takada T, Yamana K.
    Bioorg Med Chem; 2009 Jul 15; 17(14):4996-5000. PubMed ID: 19527936
    [Abstract] [Full Text] [Related]

  • 18. Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study.
    Barthel A, Zacharias M.
    Biophys J; 2006 Apr 01; 90(7):2450-62. PubMed ID: 16399833
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  • 19. Single-molecule study of the inhibition of HIV-1 transactivation response region DNA/DNA annealing by argininamide.
    Landes CF, Zeng Y, Liu HW, Musier-Forsyth K, Barbara PF.
    J Am Chem Soc; 2007 Aug 22; 129(33):10181-8. PubMed ID: 17658799
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  • 20. Site-specific chemical labeling of long RNA molecules.
    Jahn K, Olsen EM, Nielsen MM, Tørring T, MohammadZadegan R, Andersen ES, Gothelf KV, Kjems J.
    Bioconjug Chem; 2011 Jan 19; 22(1):95-100. PubMed ID: 21138255
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