These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel. Shi Q, Izvekov S, Voth GA. J Phys Chem B; 2006 Aug 10; 110(31):15045-8. PubMed ID: 16884212 [Abstract] [Full Text] [Related]
4. Dynamics of water in the hydration shells of C60: molecular dynamics simulation using a coarse-grained model. Choudhury N. J Phys Chem B; 2007 Sep 06; 111(35):10474-80. PubMed ID: 17696526 [Abstract] [Full Text] [Related]
5. Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites. Rzepiela AJ, Louhivuori M, Peter C, Marrink SJ. Phys Chem Chem Phys; 2011 Jun 14; 13(22):10437-48. PubMed ID: 21494747 [Abstract] [Full Text] [Related]
12. A coarse-grained model for polyethylene glycol polymer. Wang Q, Keffer DJ, Nicholson DM. J Chem Phys; 2011 Dec 07; 135(21):214903. PubMed ID: 22149813 [Abstract] [Full Text] [Related]
15. Reconstructing atomistic detail for coarse-grained models with resolution exchange. Liu P, Shi Q, Lyman E, Voth GA. J Chem Phys; 2008 Sep 21; 129(11):114103. PubMed ID: 19044946 [Abstract] [Full Text] [Related]
16. An application of coupled reference interaction site model/molecular dynamics to the conformational analysis of the alanine dipeptide. Freedman H, Truong TN. J Chem Phys; 2004 Dec 22; 121(24):12447-56. PubMed ID: 15606265 [Abstract] [Full Text] [Related]
17. Molecular dynamics simulations of polyglutamine aggregation using solvent-free multiscale coarse-grained models. Wang Y, Voth GA. J Phys Chem B; 2010 Jul 08; 114(26):8735-43. PubMed ID: 20550147 [Abstract] [Full Text] [Related]
18. The multiscale coarse-graining method. VII. Free energy decomposition of coarse-grained effective potentials. Lu L, Voth GA. J Chem Phys; 2011 Jun 14; 134(22):224107. PubMed ID: 21682507 [Abstract] [Full Text] [Related]
19. Coarse-grained ions without charges: reproducing the solvation structure of NaCl in water using short-ranged potentials. DeMille RC, Molinero V. J Chem Phys; 2009 Jul 21; 131(3):034107. PubMed ID: 19624181 [Abstract] [Full Text] [Related]