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Journal Abstract Search

256 related items for PubMed ID: 19369218

  • 1. Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition.
    Frank AT, Stelzer AC, Al-Hashimi HM, Andricioaei I.
    Nucleic Acids Res; 2009 Jun; 37(11):3670-9. PubMed ID: 19369218
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  • 3. Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition.
    Casiano-Negroni A, Sun X, Al-Hashimi HM.
    Biochemistry; 2007 Jun 05; 46(22):6525-35. PubMed ID: 17488097
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  • 4. A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed.
    Salmon L, Bascom G, Andricioaei I, Al-Hashimi HM.
    J Am Chem Soc; 2013 Apr 10; 135(14):5457-66. PubMed ID: 23473378
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  • 7. Shortening the HIV-1 TAR RNA Bulge by a Single Nucleotide Preserves Motional Modes over a Broad Range of Time Scales.
    Merriman DK, Xue Y, Yang S, Kimsey IJ, Shakya A, Clay M, Al-Hashimi HM.
    Biochemistry; 2016 Aug 16; 55(32):4445-56. PubMed ID: 27232530
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  • 9. iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge.
    Musselman C, Al-Hashimi HM, Andricioaei I.
    Biophys J; 2007 Jul 15; 93(2):411-22. PubMed ID: 17449677
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  • 11. Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge.
    Aboul-ela F, Karn J, Varani G.
    Nucleic Acids Res; 1996 Oct 15; 24(20):3974-81. PubMed ID: 8918800
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  • 12. Dynamic ensemble view of the conformational landscape of HIV-1 TAR RNA and allosteric recognition.
    Lu J, Kadakkuzha BM, Zhao L, Fan M, Qi X, Xia T.
    Biochemistry; 2011 Jun 07; 50(22):5042-57. PubMed ID: 21553929
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  • 16. Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction.
    Shi H, Rangadurai A, Abou Assi H, Roy R, Case DA, Herschlag D, Yesselman JD, Al-Hashimi HM.
    Nat Commun; 2020 Nov 02; 11(1):5531. PubMed ID: 33139729
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  • 17. Elucidating molecular motion through structural and dynamic filters of energy-minimized conformer ensembles.
    Emani PS, Bardaro MF, Huang W, Aragon S, Varani G, Drobny GP.
    J Phys Chem B; 2014 Feb 20; 118(7):1726-42. PubMed ID: 24479561
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  • 18. Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis.
    Dethoff EA, Hansen AL, Musselman C, Watt ED, Andricioaei I, Al-Hashimi HM.
    Biophys J; 2008 Oct 20; 95(8):3906-15. PubMed ID: 18621815
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  • 19. Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation.
    Dayie KT, Brodsky AS, Williamson JR.
    J Mol Biol; 2002 Mar 22; 317(2):263-78. PubMed ID: 11902842
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  • 20. Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries.
    Ferner J, Suhartono M, Breitung S, Jonker HR, Hennig M, Wöhnert J, Göbel M, Schwalbe H.
    Chembiochem; 2009 Jun 15; 10(9):1490-4. PubMed ID: 19444830
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