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Journal Abstract Search

897 related items for PubMed ID: 19376823

  • 1.
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  • 3. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H, Tabei Y, Kin T, Asai K.
    Bioinformatics; 2007 Jul 01; 23(13):1588-98. PubMed ID: 17459961
    [Abstract] [Full Text] [Related]

  • 4. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
    Havgaard JH, Lyngsø RB, Stormo GD, Gorodkin J.
    Bioinformatics; 2005 May 01; 21(9):1815-24. PubMed ID: 15657094
    [Abstract] [Full Text] [Related]

  • 5. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y, Tsuda K, Kin T, Asai K.
    Bioinformatics; 2006 Jul 15; 22(14):1723-9. PubMed ID: 16690634
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  • 6. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T, Blencowe BJ, Hughes TR.
    BMC Bioinformatics; 2007 Jan 30; 8():33. PubMed ID: 17263882
    [Abstract] [Full Text] [Related]

  • 7. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
    Kiryu H, Kin T, Asai K.
    Bioinformatics; 2007 Feb 15; 23(4):434-41. PubMed ID: 17182698
    [Abstract] [Full Text] [Related]

  • 8. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S, Gardner PP, Krogh A.
    Bioinformatics; 2007 Dec 15; 23(24):3304-11. PubMed ID: 18006551
    [Abstract] [Full Text] [Related]

  • 9. RNA secondary structural alignment with conditional random fields.
    Sato K, Sakakibara Y.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii237-42. PubMed ID: 16204111
    [Abstract] [Full Text] [Related]

  • 10. NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.
    Rose D, Hertel J, Reiche K, Stadler PF, Hackermüller J.
    Genomics; 2008 Jul 01; 92(1):65-74. PubMed ID: 18511233
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  • 11. ARTS: alignment of RNA tertiary structures.
    Dror O, Nussinov R, Wolfson H.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii47-53. PubMed ID: 16204124
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  • 12. Multiple structural alignment and clustering of RNA sequences.
    Torarinsson E, Havgaard JH, Gorodkin J.
    Bioinformatics; 2007 Apr 15; 23(8):926-32. PubMed ID: 17324941
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  • 13. Alignment of RNA base pairing probability matrices.
    Hofacker IL, Bernhart SH, Stadler PF.
    Bioinformatics; 2004 Sep 22; 20(14):2222-7. PubMed ID: 15073017
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  • 14. A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.
    Zhang S, Borovok I, Aharonowitz Y, Sharan R, Bafna V.
    Bioinformatics; 2006 Jul 15; 22(14):e557-65. PubMed ID: 16873520
    [Abstract] [Full Text] [Related]

  • 15. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 16. Sequence-based heuristics for faster annotation of non-coding RNA families.
    Weinberg Z, Ruzzo WL.
    Bioinformatics; 2006 Jan 01; 22(1):35-9. PubMed ID: 16267089
    [Abstract] [Full Text] [Related]

  • 17. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J, Wang JT, Hu J, Tian B.
    BMC Bioinformatics; 2005 Apr 07; 6():89. PubMed ID: 15817128
    [Abstract] [Full Text] [Related]

  • 18. RNA structure alignment by a unit-vector approach.
    Capriotti E, Marti-Renom MA.
    Bioinformatics; 2008 Aug 15; 24(16):i112-8. PubMed ID: 18689811
    [Abstract] [Full Text] [Related]

  • 19. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
    Dalli D, Wilm A, Mainz I, Steger G.
    Bioinformatics; 2006 Jul 01; 22(13):1593-9. PubMed ID: 16613908
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  • 20. Sequence and structure analysis of noncoding RNAs.
    Washietl S.
    Methods Mol Biol; 2010 Jul 01; 609():285-306. PubMed ID: 20221926
    [Abstract] [Full Text] [Related]

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