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Journal Abstract Search

897 related items for PubMed ID: 19376823

  • 21. StructMiner: a tool for alignment and detection of conserved secondary structure.
    Yang Q, Blanchette M.
    Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496
    [Abstract] [Full Text] [Related]

  • 22. Prediction of RNA secondary structure using generalized centroid estimators.
    Hamada M, Kiryu H, Sato K, Mituyama T, Asai K.
    Bioinformatics; 2009 Feb 15; 25(4):465-73. PubMed ID: 19095700
    [Abstract] [Full Text] [Related]

  • 23. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Ji Y, Xu X, Stormo GD.
    Bioinformatics; 2004 Jul 10; 20(10):1591-602. PubMed ID: 14962926
    [Abstract] [Full Text] [Related]

  • 24. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
    Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M.
    BMC Bioinformatics; 2006 Nov 13; 7():498. PubMed ID: 17101042
    [Abstract] [Full Text] [Related]

  • 25. Fast model-based protein homology detection without alignment.
    Hochreiter S, Heusel M, Obermayer K.
    Bioinformatics; 2007 Jul 15; 23(14):1728-36. PubMed ID: 17488755
    [Abstract] [Full Text] [Related]

  • 26. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
    Siddharthan R.
    BMC Bioinformatics; 2006 Mar 16; 7():143. PubMed ID: 16542424
    [Abstract] [Full Text] [Related]

  • 27. [A method for prediction of conserved RNA secondary structures].
    Mironov AA.
    Mol Biol (Mosk); 2007 Mar 16; 41(4):711-8. PubMed ID: 17936993
    [Abstract] [Full Text] [Related]

  • 28. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J, Giegerich R.
    Bioinformatics; 2005 Sep 01; 21(17):3516-23. PubMed ID: 16020472
    [Abstract] [Full Text] [Related]

  • 29. Probalign: multiple sequence alignment using partition function posterior probabilities.
    Roshan U, Livesay DR.
    Bioinformatics; 2006 Nov 15; 22(22):2715-21. PubMed ID: 16954142
    [Abstract] [Full Text] [Related]

  • 30. Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    Washietl S, Hofacker IL.
    J Mol Biol; 2004 Sep 03; 342(1):19-30. PubMed ID: 15313604
    [Abstract] [Full Text] [Related]

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  • 32. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    Notredame C, Higgins DG, Heringa J.
    J Mol Biol; 2000 Sep 08; 302(1):205-17. PubMed ID: 10964570
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  • 34. An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.
    Soldà G, Makunin IV, Sezerman OU, Corradin A, Corti G, Guffanti A.
    Brief Bioinform; 2009 Sep 08; 10(5):475-89. PubMed ID: 19383843
    [Abstract] [Full Text] [Related]

  • 35. Mining frequent stem patterns from unaligned RNA sequences.
    Hamada M, Tsuda K, Kudo T, Kin T, Asai K.
    Bioinformatics; 2006 Oct 15; 22(20):2480-7. PubMed ID: 16908501
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  • 37. PALMA: mRNA to genome alignments using large margin algorithms.
    Schulze U, Hepp B, Ong CS, Rätsch G.
    Bioinformatics; 2007 Aug 01; 23(15):1892-900. PubMed ID: 17537755
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