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Journal Abstract Search

1895 related items for PubMed ID: 19381531

  • 1. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R, Singhal M.
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [Abstract] [Full Text] [Related]

  • 2. SEBINI: Software Environment for BIological Network Inference.
    Taylor RC, Shah A, Treatman C, Blevins M.
    Bioinformatics; 2006 Nov 01; 22(21):2706-8. PubMed ID: 16954144
    [Abstract] [Full Text] [Related]

  • 3. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
    Taylor RC, Singhal M, Weller J, Khoshnevis S, Shi L, McDermott J.
    Ann N Y Acad Sci; 2009 Mar 01; 1158():143-58. PubMed ID: 19348639
    [Abstract] [Full Text] [Related]

  • 4. An analysis pipeline for the inference of protein-protein interaction networks.
    Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.
    Int J Data Min Bioinform; 2009 Mar 01; 3(4):409-30. PubMed ID: 20052905
    [Abstract] [Full Text] [Related]

  • 5. CABIN: collective analysis of biological interaction networks.
    Singhal M, Domico K.
    Comput Biol Chem; 2007 Jun 01; 31(3):222-5. PubMed ID: 17500038
    [Abstract] [Full Text] [Related]

  • 6. Selective integration of multiple biological data for supervised network inference.
    Kato T, Tsuda K, Asai K.
    Bioinformatics; 2005 May 15; 21(10):2488-95. PubMed ID: 15728114
    [Abstract] [Full Text] [Related]

  • 7. MAVisto: a tool for biological network motif analysis.
    Schwöbbermeyer H, Wünschiers R.
    Methods Mol Biol; 2012 May 15; 804():263-80. PubMed ID: 22144158
    [Abstract] [Full Text] [Related]

  • 8. Gene expression complex networks: synthesis, identification, and analysis.
    Lopes FM, Cesar RM, Costa Lda F.
    J Comput Biol; 2011 Oct 15; 18(10):1353-67. PubMed ID: 21548810
    [Abstract] [Full Text] [Related]

  • 9. Gene set-level network analysis using a toxicogenomics database.
    Kiyosawa N, Manabe S, Sanbuissho A, Yamoto T.
    Genomics; 2010 Jul 15; 96(1):39-49. PubMed ID: 20363313
    [Abstract] [Full Text] [Related]

  • 10. Advances to Bayesian network inference for generating causal networks from observational biological data.
    Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED.
    Bioinformatics; 2004 Dec 12; 20(18):3594-603. PubMed ID: 15284094
    [Abstract] [Full Text] [Related]

  • 11. Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.
    Werhli AV, Grzegorczyk M, Husmeier D.
    Bioinformatics; 2006 Oct 15; 22(20):2523-31. PubMed ID: 16844710
    [Abstract] [Full Text] [Related]

  • 12. Network legos: building blocks of cellular wiring diagrams.
    Murali TM, Rivera CG.
    J Comput Biol; 2008 Sep 15; 15(7):829-44. PubMed ID: 18707557
    [Abstract] [Full Text] [Related]

  • 13. Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.
    Taylor RC, Acquaah-Mensah G, Singhal M, Malhotra D, Biswal S.
    PLoS Comput Biol; 2008 Aug 29; 4(8):e1000166. PubMed ID: 18769717
    [Abstract] [Full Text] [Related]

  • 14. An algebra-based method for inferring gene regulatory networks.
    Vera-Licona P, Jarrah A, Garcia-Puente LD, McGee J, Laubenbacher R.
    BMC Syst Biol; 2014 Mar 26; 8():37. PubMed ID: 24669835
    [Abstract] [Full Text] [Related]

  • 15. Network Analysis Tools: from biological networks to clusters and pathways.
    Brohée S, Faust K, Lima-Mendez G, Vanderstocken G, van Helden J.
    Nat Protoc; 2008 Mar 26; 3(10):1616-29. PubMed ID: 18802442
    [Abstract] [Full Text] [Related]

  • 16. Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.
    van Helden J, Toussaint A, Thieffry D.
    Methods Mol Biol; 2012 Mar 26; 804():1-11. PubMed ID: 22144145
    [Abstract] [Full Text] [Related]

  • 17. Building Transcriptional Association Networks in Cytoscape with RegNetC.
    Nepomuceno-Chamorro IA, Marquez-Chamorro A, Aguilar-Ruiz JS.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Mar 26; 12(4):823-4. PubMed ID: 26357322
    [Abstract] [Full Text] [Related]

  • 18.
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  • 19. Integration of genomic information with biological networks using Cytoscape.
    Bauer-Mehren A.
    Methods Mol Biol; 2013 Mar 26; 1021():37-61. PubMed ID: 23715979
    [Abstract] [Full Text] [Related]

  • 20. Gene regulatory network inference: data integration in dynamic models-a review.
    Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.
    Biosystems; 2009 Apr 26; 96(1):86-103. PubMed ID: 19150482
    [Abstract] [Full Text] [Related]

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